MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0029950	(3S)-3-Hydroxyadipyl-CoA	C₂₇H₄₄N₇O₂₀P₃S 911.659	Human Feces	361	Co-metabolite	Not Available
MMDBc0029951	(4S)-4,6-Dihydroxy-2,5-dioxohexanoate	C₆H₈O₆ 176.1241	Not Available	91	Co-metabolite	Not Available
MMDBc0029952	(R)-3-Hydroxy-3-methyl-2-oxopentanoate	C₆H₁₀O₄ 146.1412	Human Feces	628	Co-metabolite	Not Available
MMDBc0029953	(R)-Pantoate	C₆H₁₁O₄ 147.151	Human Feces	1281	Co-metabolite
MMDBc0029954	(S)-4-Amino-5-oxopentanoate	C₅H₉NO₃ 131.1299	Not Available	607	Co-metabolite
MMDBc0029955	(S)(+)-Allantoin	C₄H₆N₄O₃ 158.1154	Not Available	48	Co-metabolite	Not Available
MMDBc0029956	1-(2-Carboxyphenylamino)-1'-deoxy-D-ribulose 5'-phosphate	C₁₂H₁₆NO₉P 349.2305	Not Available	1	Co-metabolite	Not Available
MMDBc0029957	1-Hydroxy-2-methyl-2-butenyl 4-diphosphate	C₅H₁₂O₈P₂ 262.0915	Human Blood	1	Co-metabolite	Not Available
MMDBc0029958	1-Hydroxymethylnaphthalene	C₁₁H₁₀O 158.1965	Not Available	1	Co-metabolite	Not Available
MMDBc0029959	1-Nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene	C₂₀H₂₄N₄O₉S 496.491	Human Feces	1	Co-metabolite	Not Available
MMDBc0029960	1-Nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene	C₂₀H₂₄N₄O₉S 496.491	Human Feces	1	Co-metabolite	Not Available
MMDBc0029961	1-Nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene	C₂₀H₂₄N₄O₉S 496.491	Human Feces	1	Co-metabolite	Not Available
MMDBc0029962	1-Nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene	C₂₀H₂₄N₄O₉S 496.491	Human Feces	1	Co-metabolite	Not Available
MMDBc0029963	1-Nitronaphthalene-5,6-oxide	C₁₀H₇NO₃ 189.1675	Human Feces	1	Co-metabolite	Not Available
MMDBc0029964	1-Nitronaphthalene-7,8-oxide	C₁₀H₇NO₃ 189.1675	Human Feces	1	Co-metabolite	Not Available
MMDBc0029965	1-Pyrroline	C₄H₇N 69.1051	Human Feces	47	Co-metabolite
MMDBc0029966	1,4-Dihydroxy-2-naphthoyl-CoA	C₃₂H₃₈N₇O₁₉P₃S 949.67	Human Feces	51	Co-metabolite	Not Available
MMDBc0029967	2-(alpha-D-Mannosyl)-3-phosphoglycerate	C₉H₁₇O₁₂P 348.1978	Not Available	1	Co-metabolite	Not Available
MMDBc0029968	2-(S-Glutathionyl)acetyl chloride	C₁₂H₁₈ClN₃O₇S 383.805	Human Feces	1	Co-metabolite	Not Available
MMDBc0029969	2-(S-Glutathionyl)acetyl glutathione	C₂₂H₃₄N₆O₁₃S₂ 654.668	Human Feces	1	Co-metabolite	Not Available
MMDBc0029970	2-Amino-3-oxo-4-phosphonooxybutyrate	C₄H₈NO₇P 213.0826	Human Feces	481	Co-metabolite	Not Available
MMDBc0029971	2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate	C₇H₁₃O₁₀P 288.1459	Human Feces	762	Co-metabolite
MMDBc0029972	2-Dehydro-3-deoxy-D-glucarate	C₆H₈O₇ 192.1235	Human Feces	134	Co-metabolite	Not Available
MMDBc0029973	2-Hydroxy-2,4-pentadienoate	C₅H₆O₃ 114.0993	Not Available	1	Co-metabolite	Not Available
MMDBc0029974	2-Hydroxy-6-ketononatrienedioate	C₉H₈O₆ 212.1562	Human Feces	1	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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