MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0055040	(R)-4'-phosphopantetheine	C₁₁H₂₁N₂O₇PS 356.33	Not Available	675	Co-metabolite	Not Available
MMDBc0055036	(R)-3-phenyllactoyl-CoA	C₃₀H₄₀N₇O₁₈P₃S 911.66	Not Available	1	Co-metabolite	Not Available
MMDBc0055035	(R)-3-phenyllactic acid	C₉H₉O₃ 165.169	Not Available	4	Co-metabolite	Not Available
MMDBc0055034	(R)-3-hydroxy-2-oxo-4-phosphooxybutanoic acid	C₄H₄O₈P 211.043	Not Available	299	Co-metabolite	Not Available
MMDBc0055033	(R)-3-(indol-3-yl)lactoyl-CoA	C₃₂H₄₁N₈O₁₈P₃S 950.7	Not Available	1	Co-metabolite	Not Available
MMDBc0055032	(R)-3-(indol-3-yl)-2-oxobutanoic acid	C₁₂H₁₀NO₃ 216.217	Not Available	1	Co-metabolite	Not Available
MMDBc0055031	(R)-3-(4-hydroxyphenyl)lactoyl-CoA	C₃₀H₄₀N₇O₁₉P₃S 927.66	Not Available	1	Co-metabolite	Not Available
MMDBc0055029	(R)-2-hydroxyhexadecanoic acid	C₁₆H₃₁O₃ 271.422	Not Available	2	Co-metabolite	Not Available
MMDBc0055028	(R)-2-hydroxyglutaryl-CoA	C₂₆H₃₇N₇O₂₀P₃S 892.6	Not Available	1	Co-metabolite	Not Available
MMDBc0055027	(R)-2-hydroxy-3-methylbutyric acid	C₅H₉O₃ 117.125	Not Available	3	Co-metabolite	Not Available
MMDBc0055025	(R)-2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoic acid	C₇H₄O₆ 184.104	Not Available	2	Co-metabolite	Not Available
MMDBc0055024	(R)-2-(4-chloro-2-methylphenoxy)propanoic acid	C₁₀H₁₀ClO₃ 213.64	Not Available	2	Co-metabolite	Not Available
MMDBc0055023	(R)-10-hydroxyoctadecanoic acid	C₁₈H₃₅O₃ 299.476	Not Available	3	Co-metabolite	Not Available
MMDBc0055020	(Kdo)2-lipid A 1-diphosphate	C₁₁₀H₁₉₆N₂O₄₂P₃ 2311.675	Not Available	1	Co-metabolite	Not Available
MMDBc0055019	(indol-3-yl)acetyl-L-aspartic acid	C₁₄H₁₂N₂O₅ 288.26	Not Available	1	Co-metabolite	Not Available
MMDBc0055017	(E)-feruloyl-CoA	C₃₁H₄₀N₇O₁₉P₃S 939.67	Not Available	2	Co-metabolite	Not Available
MMDBc0055016	(E)-caffeoyl-CoA	C₃₀H₃₈N₇O₁₉P₃S 925.65	Not Available	2	Co-metabolite	Not Available
MMDBc0055015	(E)-caffeate	C₉H₇O₄ 179.152	Not Available	3	Co-metabolite	Not Available
MMDBc0055014	(E)-ascladiol	C₇H₈O₄ 156.137	Not Available	2	Co-metabolite	Not Available
MMDBc0055013	(E)-3-(indol-3-yl)acryloyl-CoA	C₃₂H₃₉N₈O₁₇P₃S 932.69	Not Available	1	Co-metabolite	Not Available
MMDBc0055012	(E)-3-(indol-3-yl)acrylic acid	C₁₁H₈NO₂ 186.191	Not Available	1	Co-metabolite	Not Available
MMDBc0055010	(E)-2-methylgeranyl diphosphate	C₁₁H₁₉O₇P₂ 325.215	Not Available	5	Co-metabolite	Not Available
MMDBc0055009	(E)-2-epi-beta-caryophyllene	C₁₅H₂₄ 204.357	Not Available	1	Co-metabolite	Not Available
MMDBc0055008	(E)-2-(methoxycarbonylmethyl)but-2-enedioic acid	C₇H₆O₆ 186.12	Not Available	2	Co-metabolite	Not Available
MMDBc0055006	(9Z)-tetradecenoyl-CoA	C₃₅H₅₆N₇O₁₇P₃S 971.85	Not Available	1	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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