MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0055005	(9Z)-hexadecenoyl-CoA	C₃₇H₆₀N₇O₁₇P₃S 999.9	Not Available	7	Co-metabolite	Not Available
MMDBc0054999	(9Z,12Z)-octadecadienoic acid	C₁₈H₃₁O₂ 279.445	Not Available	16	Co-metabolite	Not Available
MMDBc0054993	(8Z,11Z,14Z)-eicosatrienoic acid	C₂₀H₃₃O₂ 305.483	Not Available	1	Co-metabolite	Not Available
MMDBc0054992	(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate	C₁₀H₁₂N₅O₁₄P₃ 519.15	Not Available	358	Co-metabolite	Not Available
MMDBc0054991	(8E,10S)-10-hydroperoxy-octadeca-8-enoic acid	C₁₈H₃₃O₄ 313.459	Not Available	1	Co-metabolite	Not Available
MMDBc0054990	(8E,10S,12Z)-10-hydroperoxyoctadeca-8,12-dienoic acid	C₁₈H₃₁O₄ 311.443	Not Available	1	Co-metabolite	Not Available
MMDBc0054989	(8E,10S,12Z,15Z)-10-hydroperoxyoctadeca-8,12,15-trienoic acid	C₁₈H₂₉O₄ 309.427	Not Available	1	Co-metabolite	Not Available
MMDBc0054988	(8E,10R,12Z)-10-hydroperoxyoctadeca-8,12-dienoic acid	C₁₈H₃₁O₄ 311.443	Not Available	1	Co-metabolite	Not Available
MMDBc0054984	(7R,8S)-7,8-diammoniononanoic acid	C₉H₂₁N₂O₂ 189.278	Not Available	259	Co-metabolite	Not Available
MMDBc0054981	(6S)-NADPHX	C₂₁H₂₈N₇O₁₈P₃ 759.409	Not Available	100	Co-metabolite	Not Available
MMDBc0054980	(6S)-NADHX	C₂₁H₂₉N₇O₁₅P₂ 681.446	Not Available	100	Co-metabolite	Not Available
MMDBc0054979	(6S)-5,6,7,8-tetrahydropteroic acid	C₁₄H₁₅N₆O₃ 315.314	Not Available	1	Co-metabolite	Not Available
MMDBc0054978	(6R)-NADPHX	C₂₁H₂₈N₇O₁₈P₃ 759.409	Not Available	83	Co-metabolite	Not Available
MMDBc0054977	(6R)-NADHX	C₂₁H₂₉N₇O₁₅P₂ 681.446	Not Available	83	Co-metabolite	Not Available
MMDBc0054976	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	C₂₀H₂₁N₇O₆ 455.432	Not Available	906	Co-metabolite	Not Available
MMDBc0054973	(5Z,8Z,11Z,14Z)-eicosatetraenoic acid	C₂₀H₃₁O₂ 303.467	Not Available	5	Co-metabolite	Not Available
MMDBc0054968	(5S,8R,9Z,12Z)-5,8-dihydroxyoctadeca-9,12-dienoic acid	C₁₈H₃₁O₄ 311.443	Not Available	4	Co-metabolite	Not Available
MMDBc0054966	(4Z)-2-oxohept-4-enedioic acid	C₇H₆O₅ 170.121	Not Available	2	Co-metabolite	Not Available
MMDBc0054965	(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoic acid	C₂₂H₃₁O₂ 327.489	Not Available	1	Co-metabolite	Not Available
MMDBc0054964	(4S)-4-hydroxy-L-isoleucine	C₆H₁₃NO₃ 147.174	Not Available	1	Co-metabolite	Not Available
MMDBc0054963	(4S)-4-hydroxy-2-oxoheptanedioic acid	C₇H₈O₆ 188.136	Not Available	1	Co-metabolite	Not Available
MMDBc0054962	(4S)-4-hydroxy-2-oxoglutarate	C₅H₄O₆ 160.082	Not Available	12	Co-metabolite	Not Available
MMDBc0054960	(4S,8R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,16,19-heptaen-18-one	C₁₈H₁₂O₇ 340.287	Not Available	2	Co-metabolite	Not Available
MMDBc0054959	(4S,8R,16R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,19-hexaen-18-one	C₁₈H₁₄O₇ 342.303	Not Available	2	Co-metabolite	Not Available
MMDBc0054958	(4S,7S)-7-hydroxy-4-isopropenyl-7-methyloxepan-2-one	C₁₀H₁₆O₃ 184.235	Not Available	1	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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