MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0048026	Luteolin	C₁₅H₁₀O₆ 286.2363	Human Blood Human Feces Human Urine	11	Co-metabolite
MMDBc0048027	Indoxyl glucuronide	C₁₄H₁₅NO₇ 309.2714	Human Blood Human Kidney Human Liver Human Urine	0	Co-metabolite	Not Available
MMDBc0048039	Cobalt	Co 58.9332	Human Feces Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Saliva Human Epidermis Human Kidney	890	Co-metabolite	Not Available
MMDBc0048042	N(5)-formyl-5,6,7,8-tetrahydromethanopterin	C₃₁H₄₂N₆O₁₇P 801.677	Human Feces	55	Co-metabolite	Not Available
MMDBc0048043	N-Acetyl-D-muramoyl-L-alanine	C₁₄H₂₄N₂O₉ 364.3484	Human Feces	77	Co-metabolite	Not Available
MMDBc0048044	N-Acetyl-D-muramoate	C₁₁H₁₉NO₈ 293.2705	Human Feces	77	Co-metabolite	Not Available
MMDBc0048045	TG(18:4(6Z,9Z,12Z,15Z)/18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	C₅₉H₉₄O₆ 899.395	Human Feces	661	Co-metabolite	Not Available
MMDBc0048046	(S)-3-Hydroxyoctanoyl-CoA	C₂₉H₅₀N₇O₁₈P₃S 909.73	Human Feces	385	Co-metabolite	Not Available
MMDBc0048047	5-Methyl-5,6,7,8-tetrahydromethanopterin	C₃₁H₄₄N₆O₁₆P 787.694	Human Feces	25	Co-metabolite	Not Available
MMDBc0048048	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	C₃₁H₄₄N₆O₁₆P 787.6854	Human Feces	59	Co-metabolite	Not Available
MMDBc0048052	Cob(II)yrinate a,c diamide	C₄₅H₆₁CoN₆O₁₂ 936.946	Human Feces	486	Co-metabolite	Not Available
MMDBc0048053	Adenosyl cobyrinate diamide	C₅₅H₇₃CoN₁₁O₁₅ 1187.166	Human Feces	554	Co-metabolite	Not Available
MMDBc0048054	Cobyrinate	C₄₅H₅₉CoN₄O₁₄ 938.913	Human Feces	540	Co-metabolite	Not Available
MMDBc0048055	Cobalt-dihydro-precorrin 6	C₄₄H₅₅CoN₄O₁₆ 954.869	Human Feces	311	Co-metabolite	Not Available
MMDBc0048056	Cobalt-precorrin 8	C₄₅H₅₉CoN₄O₁₄ 938.914	Human Feces	522	Co-metabolite	Not Available
MMDBc0048057	Hydrogenobyrinate a,c diamide	C₄₅H₆₂N₆O₁₂ 879.021	Human Feces	314	Co-metabolite	Not Available
MMDBc0048058	Hydrogenobyrinate	C₄₅H₆₀N₄O₁₄ 880.989	Human Feces	549	Co-metabolite	Not Available
MMDBc0048059	Precorrin 6B	C₄₄H₅₆N₄O₁₆ 896.944	Human Feces	286	Co-metabolite	Not Available
MMDBc0048060	Precorrin 8	C₄₅H₆₀N₄O₁₄ 880.989	Human Feces	526	Co-metabolite	Not Available
MMDBc0048061	3-Dehydrocholic acid; 3oxo-7alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid	C₂₄H₃₈O₅ 406.563	Human Feces Human Gall Bladder Human Intestine Human Kidney Human Liver	25	Co-metabolite	Not Available
MMDBc0048062	Adenosine-GDP-cobinamide	C₆₈H₉₇CoN₂₁O₂₁P₂ 1665.5066	Human Feces	750	Co-metabolite	Not Available
MMDBc0048064	Isochenodeoxycholic acid; 3beta,7alpha,12alpha-Trihydroxy-5beta-cholanic acid	C₂₄H₄₀O₄ 392.572	Human Feces Human Gall Bladder Human Intestine Human Kidney Human Liver	12	Co-metabolite	Not Available
MMDBc0048066	Pentaglutamyl Folate (Thf)	C₃₉H₄₅N₁₁O₁₈ 955.851	Human Feces	487	Co-metabolite	Not Available
MMDBc0048100	CE(18:1(9Z))	C₄₅H₇₈O₂ 651.0996	Human Feces Human Blood Human Adipose Tissue Human Adrenal Cortex Human Adrenal Gland Human Epidermis Human Fibroblasts Human Intestine Human Liver Human Neuron Human Platelet Human Spleen Human Testis	1	Co-metabolite	Not Available
MMDBc0048106	Nervonic acid	C₂₄H₄₅O₂ 365.623	Human Feces Human Blood Human Placenta	4	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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