MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0048107	Erucic acid	C₂₂H₄₁O₂ 337.569	Human Feces Human Blood Human Adrenal Gland Human Placenta	10	Co-metabolite	Not Available
MMDBc0048123	Stearidonic acid	C₁₈H₂₇O₂ 275.413	Human Feces Human Blood Human Placenta	3	Co-metabolite	Not Available
MMDBc0048166	Glutaconate	C₅H₄O₄ 128.084	Human Feces	1	Co-metabolite	Not Available
MMDBc0048172	2-Aminomuconic acid	C₆H₆NO₄ 156.118	Human Feces	3	Co-metabolite	Not Available
MMDBc0048207	3-Methylthiopropionic acid	C₄H₇O₂S 119.16	Human Feces Human Urine	117	Co-metabolite	Not Available
MMDBc0048213	Acrylate	C₃H₃O₂ 71.056	Human Feces	222	Co-metabolite	Not Available
MMDBc0048215	D-Limonene	C₁₀H₁₆ 136.234	Human Feces Human Blood Human Epidermis	1	Co-metabolite	Not Available
MMDBc0048216	Perillyl aldehyde	C₁₀H₁₄O 150.221	Human Feces Human Saliva	12	Co-metabolite	Not Available
MMDBc0048217	Perillic acid	C₁₀H₁₃O₂ 165.213	Human Feces Human Blood Human Kidney Human Liver	10	Co-metabolite	Not Available
MMDBc0048236	Trans,Trans,Cis-Geranylgeranyl Diphosphate	C₂₀H₃₃O₇P₂ 447.426	Human Feces	438	Co-metabolite	Not Available
MMDBc0048238	5-Carboxy-2-oxohept-3-enedioate	C₈H₈O₇ 216.145	Human Feces	137	Co-metabolite	Not Available
MMDBc0048248	4-Oxo-1-(3-pyridyl)-1-butanone	C₉H₉NO₂ 163.176	Human Feces	1	Co-metabolite	Not Available
MMDBc0048256	2-trans,6-trans-Farnesal	C₁₅H₂₄O 220.356	Human Feces	10	Co-metabolite	Not Available
MMDBc0048258	2-Aminomuconic acid semialdehyde	C₆H₇NO₃ 141.1247	Human Feces	3	Co-metabolite	Not Available
MMDBc0048260	5-Carboxymethyl-2-hydroxymuconate semialdehyde	C₈H₈O₆ 200.146	Human Feces	74	Co-metabolite	Not Available
MMDBc0048262	Phosphonoacetaldehyde	C₂H₅O₄P 124.0325	Human Feces	269	Co-metabolite	Not Available
MMDBc0048263	Sulfoacetaldehyde	C₂H₄O₄S 124.11	Human Feces	17	Co-metabolite	Not Available
MMDBc0048267	2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	C₆H₁₁O₆PS 242.18	Human Feces	77	Co-metabolite	Not Available
MMDBc0048270	Inulin	C₂₂₈H₃₈₂O₁₉₁ 6179.373	Human Feces	128	Co-metabolite	Not Available
MMDBc0048271	1-Methylpyrrolinium	C₅H₁₀N 84.1396	Human Feces	2	Co-metabolite	Not Available
MMDBc0048272	Aflatoxin B1	C₁₇H₁₂O₆ 312.2736	Human Feces Human Blood	6	Co-metabolite	Not Available
MMDBc0048287	Dopaquinone	C₉H₉NO₄ 195.1721	Human Feces	21	Co-metabolite	Not Available
MMDBc0048296	Coumarin	C₉H₆O₂ 146.145	Human Feces Human Saliva	10	Co-metabolite	Not Available
MMDBc0048336	2-Phenylacetamide	C₈H₉NO 135.1632	Human Feces	1	Co-metabolite	Not Available
MMDBc0048340	D-Arginine	C₆H₁₅N₄O₂ 175.2089	Human Feces Human Epidermis Human Platelet	11	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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