MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0051050	11,12-Methyleneoctadecanoyl-CoA	C₄₀H₇₀N₇O₁₇P₃S 1046.01	Not Available	0	Co-metabolite	Not Available
MMDBc0051334	2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate	C₇H₁₀NO₆PS 267.196	Not Available	338	Co-metabolite	Not Available
MMDBc0051340	2-Amino-2-deoxyisochorismate	C₁₀H₁₁NO₅ 225.198	Not Available	3	Co-metabolite	Not Available
MMDBc0051369	2-hydroxy-dAMP	C₁₀H₁₄N₅O₇P 347.2212	Not Available	0	Co-metabolite	Not Available
MMDBc0051438	2-Phenylethanol	C₈H₁₀O 122.1644	Human Feces	1	Co-metabolite	Not Available
MMDBc0051474	2'-O-Acetyl adenosine-5-diphosphoribose	C₁₇H₂₅N₅O₁₅P₂ 601.355	Not Available	20	Co-metabolite	Not Available
MMDBc0051522	24-Methylenecholesterol	C₂₈H₄₆O 398.6642	Not Available	12	Co-metabolite	Not Available
MMDBc0051524	24-Methylenelophenol	C₂₉H₄₈O 412.6908	Not Available	10	Co-metabolite	Not Available
MMDBc0051547	3-[(4R)-4-Hydroxycyclohexa-1,5-dien-1-yl]-2-oxopropanoate	C₉H₁₀O₄ 182.175	Not Available	4	Co-metabolite	Not Available
MMDBc0051557	3-Dehydro-D-glucose 6-phosphate	C₆H₁₁O₉P 258.119	Not Available	1	Co-metabolite	Not Available
MMDBc0051559	3-deoxy-D-manno-2-octulosonate	C₈H₁₃O₈ 237.185	Not Available	373	Co-metabolite	Not Available
MMDBc0051560	3-Fumarylpyruvate	C₇H₆O₆ 186.1189	Not Available	2	Co-metabolite	Not Available
MMDBc0051700	3-Methyl-2-butenal	C₅H₈O 84.1164	Human Feces	11	Co-metabolite	Not Available
MMDBc0051706	3-Methylcatechol	C₇H₈O₂ 124.1372	Not Available	1	Co-metabolite	Not Available
MMDBc0051870	3,5-tetradecadienoate	C₁₄H₂₄O₂ 224.3392	Not Available	0	Co-metabolite	Not Available
MMDBc0051920	4-Amino-5-aminomethyl-2-methylpyrimidine	C₆H₁₀N₄ 138.1704	Not Available	17	Co-metabolite	Not Available
MMDBc0051932	4-Fluoromuconolactone	C₆H₅FO₄ 160.0999	Not Available	0	Co-metabolite	Not Available
MMDBc0052112	5-Aminopentanal	C₅H₁₁NO 101.1469	Not Available	60	Co-metabolite	Not Available
MMDBc0052114	5-Dehydroavenasterol	C₂₉H₄₆O 410.6749	Not Available	10	Co-metabolite	Not Available
MMDBc0052117	5-Deoxyribose-1-phosphate	C₅H₁₁O₇P 214.1104	Not Available	19	Co-metabolite	Not Available
MMDBc0052123	5-Fluoromuconolactone	C₆H₅FO₄ 160.0999	Not Available	0	Co-metabolite	Not Available
MMDBc0052278	5-O-Caffeoylshikimic acid	C₁₆H₁₆O₈ 336.296	Not Available	10	Co-metabolite	Not Available
MMDBc0052757	9-hydroxydecanoic acid	C₁₀H₂₀O₃ 188.264	Not Available	2	Co-metabolite	Not Available
MMDBc0052832	9,10-Methylenehexadecanoyl-CoA	C₃₈H₆₆N₇O₁₇P₃S 1017.96	Not Available	0	Co-metabolite	Not Available
MMDBc0052833	9,10-Methylenetetradecanoyl-CoA	C₃₆H₆₂N₇O₁₇P₃S 989.91	Not Available	0	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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