| MMDBm0035718 | Talaromyces stipitatus ATCC 10500 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0097294 | Wickerhamomyces anomalus | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0164054 | Rhizopus oryzae | Fungi | Mucoromycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000592 | Plasmodium berghei | Eukaryota | Apicomplexa | Not Available | Microbial culture | Not Available |
| MMDBm0000586 | Leishmania major | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000587 | Leishmania infantum | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0001825 | Methanococcus maripaludis S2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001828 | Methanococcus aeolicus Nankai-3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001827 | Methanococcus vannielii SB | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001826 | Methanococcus maripaludis C5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001829 | Methanococcus maripaludis C7 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0810478 | Peptoniphilus harei ACS-146-V-Sch2b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000972 | Lactobacillus pobuzihii | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0764576 | Oceanobacillus sp. S1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000891 | Escherichia albertii | Bacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0648901 | Corynebacterium ammoniagenes DSM 20306 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0808657 | [Clostridium] spiroforme DSM 1552 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645903 | Actinomyces naeslundii str. Howell 279 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002480 | Rothia dentocariosa ATCC 17931 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000838 | Lactobacillus ingluviei | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
