| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000585 | Candida tropicalis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000599 | Naumovozyma dairenensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0098956 | Zygosaccharomyces rouxii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0136863 | Grifola frondosa | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0121434 | Pleurotus pulmonarius | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0159119 | Encephalitozoon cuniculi GB-M1 | Fungi | Microsporidia | Not Available | Not Available | RHEA |
| MMDBm0139153 | Lentinus sajor-caju | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0000690 | Candida dubliniensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0882065 | Thermoproteus tenax Kra 1 | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0766462 | Brochothrix thermosphacta DSM 20171 = FSL F6-1036 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794539 | Streptococcus infantis ATCC 700779 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002563 | Staphylococcus haemolyticus JCSC1435 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0534723 | Enterobacter cancerogenus ATCC 35316 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0649135 | Corynebacterium tuberculostearicum SK141 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000666 | Terrisporobacter glycolicus | Bacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000978 | Megamonas rupellensis | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001105 | Ruminococcus callidus | Bacteria | Firmicutes | Human Stool | Metabolic reconstruction | VMH |
| MMDBm0808774 | Kandleria vitulina DSM 20405 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001614 | Finegoldia magna ATCC 29328 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
