| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0086916 | Rosellinia sp. | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000587 | Leishmania infantum | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000592 | Plasmodium berghei | Eukaryota | Apicomplexa | Not Available | Microbial culture | Not Available |
| MMDBm0000586 | Leishmania major | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000439 | Streptococcus anginosus | Bacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0803018 | [Ruminococcus] lactaris ATCC 29176 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000505 | Lactobacillus fructivorans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0002403 | Pseudomonas putida F1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0787115 | Enterococcus faecalis TX0104 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002181 | Edwardsiella tarda FL6-60 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0572828 | Acinetobacter johnsonii SH046 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0796228 | Streptococcus vestibularis F0396 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000597 | Brachyspira innocens | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0650453 | Gordonia terrae C-6 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416223 | Fusobacterium nucleatum subsp. animalis 3_1_33 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001591 | Escherichia coli str. K-12 substr. DH10B | Bacteria | Proteobacteria | Human | Not Available | RHEA |
