| MMDBm0000471 | Virgibacillus halodenitrificans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000790 | Thermus igniterrae | Bacteria | Deinococcus-thermus | Not Available | Microbial culture | Not Available |
| MMDBm0000220 | Myroides injenensis | Bacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0000138 | Clostridium sporogenes | Bacteria | Firmicutes | Human Vaginal secretion | Microbial culture | Not Available |
| MMDBm0000586 | Leishmania major | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000589 | Trypanosoma cruzi | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000890 | Parvularcula bermudensis | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001027 | Acetoanaerobium sticklandii | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000219 | Methylobacterium nodulans | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000237 | Peptostreptococcus anaerobius | Bacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0001077 | Paraclostridium bifermentans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000588 | Trypanosoma brucei | Eukaryota | Euglenozoa | Goat Blood | Microbial culture | Not Available |
| MMDBm0000109 | Clostridioides difficile 630 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000108 | Clostridioides difficile | Bacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0560533 | Serratia marcescens | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0784094 | Gemella sanguinis M325 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000464 | Bacillus mycoides | Bacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0560557 | Serratia marcescens subsp. marcescens Db11 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0547370 | Raoultella planticola ATCC 33531 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002164 | Acinetobacter calcoaceticus PHEA-2 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801900 | Pseudoramibacter alactolyticus ATCC 23263 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801127 | Hungatella hathewayi 12489931 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802899 | [Clostridium] scindens ATCC 35704 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0767931 | Paenibacillus graminis RSA19 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0808650 | [Clostridium] innocuum 2959 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
