| MMDBm0002702 | Thermoplasma volcanium GSS1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001669 | Haloarcula marismortui ATCC 43049 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001672 | Halobacterium salinarum R1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002422 | Pyrobaculum arsenaticum DSM 13514 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001671 | Halobacterium sp. NRC-1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0558122 | Proteus penneri ATCC 35198 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0393500 | Porphyromonas uenonis 60-3 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794581 | Streptococcus mitis NCTC 12261 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730698 | Bacillus sonorensis L12 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0394800 | Alistipes indistinctus YIT 12060 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002601 | Streptococcus pyogenes MGAS10750 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002443 | Rhodococcus opacus B4 | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0798785 | Clostridium cadaveris AGR2141 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0483496 | Burkholderia cepacia GG4 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002490 | Salinispora tropica CNB-440 | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001713 | Idiomarina loihiensis L2TR | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002186 | Haemophilus influenzae R2846 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805488 | Faecalibacterium prausnitzii A2-165 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000248 | Prevotella melaninogenica ATCC 25845 | Bacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0394970 | Parabacteroides merdae ATCC 43184 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0796228 | Streptococcus vestibularis F0396 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0774633 | Mammaliicoccus vitulinus F1028 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
