| MMDBm0001098 | Methanobrevibacter | Archaea | Euryarchaeota | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001129 | Paraprevotella clara | Bacteria | Bacteroidetes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000812 | Pseudoflavonifractor capillosus | Bacteria | Firmicutes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001161 | Subdoligranulum sp. 4_3_54A2FAA | Bacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0105056 | Agaricus bisporus | Fungi | Basidiomycota | Human Feces | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028980 | Aspergillus oryzae RIB40 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0123553 | Pholiota nameko | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0081376 | Podospora anserina | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000343 | Sinorhizobium meliloti | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0696051 | Streptomyces antibioticus | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0696386 | Streptomyces glaucescens | NULL | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0696363 | Streptomyces galbus | NULL | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0696632 | Streptomyces lincolnensis | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0028941 | Aspergillus flavus NRRL3357 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0786958 | Enterococcus faecalis EnGen0310 = MMH594 | Bacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001575 | Enterococcus faecalis V583 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001057 | Enterococcus faecium | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000201 | Lactobacillus brevis | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0541555 | Escherichia coli K-12 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001269 | Bacillus megaterium DSM 319 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0533093 | Leminorella grimontii ATCC 33999 = DSM 5078 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0808831 | Solobacterium moorei F0204 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
