| MMDBm0000014 | Akkermansia muciniphila | Bacteria | Verrucomicrobia | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0541555 | Escherichia coli K-12 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001118 | Olsenella | Bacteria | Actinobacteria | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000181 | Faecalibacterium prausnitzii SL3/3 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802903 | [Clostridium] symbiosum WAL-14673 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805489 | Faecalibacterium cf. prausnitzii KLE1255 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000266 | Ruminococcus torques L2-14 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001125 | Subdoligranulum | Bacteria | Firmicutes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001158 | Lachnospiraceae bacterium 8_1_57FAA | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802609 | Coprococcus comes ATCC 27758 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805488 | Faecalibacterium prausnitzii A2-165 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002265 | Ruminococcus bromii L2-63 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802611 | Coprococcus eutactus ATCC 27759 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000180 | Faecalibacterium prausnitzii L2-6 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0803361 | Tyzzerella nexilis DSM 1787 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0803014 | [Ruminococcus] gnavus ATCC 29149 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001083 | Roseburia intestinalis | Bacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0805490 | Faecalibacterium prausnitzii M21/2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802902 | [Clostridium] symbiosum WAL-14163 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000175 | Eubacterium rectale M104/1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000093 | Blautia obeum A2-162 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000652 | Ruminococcus torques | Bacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
