MiMeDB: Showing metabocard for 1,1,3-tris(3-indolyl)butane (MMDBc0003049)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:11:42 UTC

Update Date

2022-08-31 06:20:25 UTC

Metabolite ID

MMDBc0003049

Metabolite Identification

Common Name

1,1,3-tris(3-indolyl)butane

Description

CHEMBL492612 belongs to the class of organic compounds known as 3-alkylindoles. 3-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position. CHEMBL492612 is an extremely weak acidic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004181500052D          

 31 36  0  0  0  0            999 V2000
    1.4358   -2.7631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -2.3215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -3.1062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9851   -3.2777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3207   -4.0314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1411   -3.9451    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3127   -3.1381    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0271   -2.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0271   -1.9006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3127   -1.4881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5982   -1.9006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5982   -2.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -3.7192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1944   -3.6330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5299   -4.3867    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9168   -4.9387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9168   -5.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2024   -6.1762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5121   -5.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5121   -4.9387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2024   -4.5262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  5 13  1  0  0  0  0
  8 13  1  0  0  0  0
  4 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 14 22  1  0  0  0  0
 17 22  1  0  0  0  0
  2 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 23 31  1  0  0  0  0
 26 31  1  0  0  0  0
M  END


  Mrv1533004181500052D          

 31 36  0  0  0  0            999 V2000
    1.4358   -2.7631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -2.3215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -3.1062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9851   -3.2777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3207   -4.0314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1411   -3.9451    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3127   -3.1381    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0271   -2.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0271   -1.9006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3127   -1.4881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5982   -1.9006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5982   -2.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -3.7192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1944   -3.6330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5299   -4.3867    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9168   -4.9387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9168   -5.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2024   -6.1762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5121   -5.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5121   -4.9387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2024   -4.5262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  5 13  1  0  0  0  0
  8 13  1  0  0  0  0
  4 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 14 22  1  0  0  0  0
 17 22  1  0  0  0  0
  2 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 23 31  1  0  0  0  0
 26 31  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0003049

> <DATABASE_NAME>
MIME

> <SMILES>
CC(CC(C1=CNC2=CC=CC=C12)C1=CNC2=CC=CC=C12)C1=CNC2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C28H25N3/c1-18(23-15-29-26-11-5-2-8-19(23)26)14-22(24-16-30-27-12-6-3-9-20(24)27)25-17-31-28-13-7-4-10-21(25)28/h2-13,15-18,22,29-31H,14H2,1H3

> <INCHI_KEY>
VZRNUXXRMJEXEA-UHFFFAOYSA-N

> <FORMULA>
C28H25N3

> <MOLECULAR_WEIGHT>
403.529

> <EXACT_MASS>
403.204847817

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
45.99014121560567

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[1,3-bis(1H-indol-3-yl)butyl]-1H-indole

> <ALOGPS_LOGP>
6.78

> <JCHEM_LOGP>
6.958305317333334

> <ALOGPS_LOGS>
-7.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.862982613880625

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.306746505616044

> <JCHEM_POLAR_SURFACE_AREA>
47.37

> <JCHEM_REFRACTIVITY>
127.44890000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.55e-06 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[1,3-bis(1H-indol-3-yl)butyl]-1H-indole

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  C   UNK     0       2.680  -5.158   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.143  -4.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.333  -5.798   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.839  -6.118   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.465  -7.525   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      -3.997  -7.364   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -4.317  -5.858   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.651  -5.088   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.651  -3.548   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.317  -2.778   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.983  -3.548   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.983  -5.088   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.698  -6.943   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.230  -6.782   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       2.856  -8.188   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       1.711  -9.219   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.711 -10.759   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.378 -11.529   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.956 -10.759   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.956  -9.219   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.378  -8.449   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   14                                                  
CONECT    5    4    6   13                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    5    8                                                  
CONECT   14    4   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   14   17                                                  
CONECT   23    2   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   23   26                                                  
MASTER        0    0    0    0    0    0    0    0   31    0   72    0
END

Synonyms

Value	Source
113-Tris(3-indolyl)butane	ChEMBL

Molecular Formula

C₂₈H₂₅N₃

Average Mass

403.529

Monoisotopic Mass

403.204847817

IUPAC Name

3-[1,3-bis(1H-indol-3-yl)butyl]-1H-indole

Traditional Name

3-[1,3-bis(1H-indol-3-yl)butyl]-1H-indole

CAS Registry Number

Not Available

SMILES

CC(CC(C1=CNC2=CC=CC=C12)C1=CNC2=CC=CC=C12)C1=CNC2=CC=CC=C12

InChI Identifier

InChI=1S/C28H25N3/c1-18(23-15-29-26-11-5-2-8-19(23)26)14-22(24-16-30-27-12-6-3-9-20(24)27)25-17-31-28-13-7-4-10-21(25)28/h2-13,15-18,22,29-31H,14H2,1H3

InChI Key

VZRNUXXRMJEXEA-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

3-alkylindoles

Alternative Parents

Substituents

3-alkylindole
Benzenoid
Substituted pyrrole
Heteroaromatic compound
Pyrrole
Azacycle
Organic nitrogen compound
Hydrocarbon derivative
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	9.6e-06 g/L	ALOGPS
logP	6.78	ALOGPS
logP	6.96	ChemAxon
logS	-7.6	ALOGPS
pKa (Strongest Acidic)	16.31	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	47.37 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	127.45 m³·mol⁻¹	ChemAxon
Polarizability	45.99 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	2	Human	Metabolic reconstruction

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11774054

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 1,1,3-tris(3-indolyl)butane (MMDBc0003049)

MOL for #<Metabolite:0x00007fdb38c83a50>

3D MOL for #<Metabolite:0x00007fdb38c83a50>

3D SDF for #<Metabolite:0x00007fdb38c83a50>

3D-SDF for #<Metabolite:0x00007fdb38c83a50>

PDB for #<Metabolite:0x00007fdb38c83a50>

3D PDB for #<Metabolite:0x00007fdb38c83a50>

SMILES for #<Metabolite:0x00007fdb38c83a50>

INCHI for #<Metabolite:0x00007fdb38c83a50>

Structure for #<Metabolite:0x00007fdb38c83a50>

3D Structure for #<Metabolite:0x00007fdb38c83a50>