MiMeDB: Showing metabocard for Î”(6)-protoilludene (MMDBc0004230)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 22:18:38 UTC

Update Date

2022-08-31 06:22:04 UTC

Metabolite ID

MMDBc0004230

Metabolite Identification

Common Name

Î”(6)-protoilludene

Description

6-protoilludene belongs to the class of organic compounds known as illudanes and illudins. These are sesquiterpenoids containing either the illudane moiety (based on a 3,6,6,7b-tetramethyl-decahydro-1H-cyclobuta[e]indene ring system), the illudin moiety (2',2',4',6'-tetramethyl-octahydrospiro[cyclopropane-1,5'-indene]), or a derivative thereof. Based on a literature review a significant number of articles have been published on 6-protoilludene.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152100182D          

 17 19  0  0  1  0            999 V2000
    1.9182    2.4092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3497    0.2859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8336   -0.6902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6532   -0.5058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2727    0.5424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7115   -0.1562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1815    1.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4330    0.9012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8090   -0.2789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3570    1.7105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6202    1.0426    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9714    0.9812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2346    0.3132    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5497    0.0844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4102    0.2826    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7958    1.0119    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9273   -0.4524    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
 10  1  1  0  0  0  0
 10  7  1  0  0  0  0
 11  7  1  0  0  0  0
 11  8  1  0  0  0  0
 12  5  1  0  0  0  0
 12 10  2  0  0  0  0
 13  9  1  0  0  0  0
 13 11  1  0  0  0  0
 14  2  1  0  0  0  0
 14  3  1  0  0  0  0
 14  8  1  0  0  0  0
 14  9  1  0  0  0  0
 15  4  1  6  0  0  0
 15  6  1  0  0  0  0
 15 12  1  0  0  0  0
 15 13  1  0  0  0  0
 11 16  1  1  0  0  0
 13 17  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0004230

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]12CC(C)(C)C[C@]1([H])[C@@]1(C)CCC1=C(C)C2

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-10-7-11-8-14(2,3)9-13(11)15(4)6-5-12(10)15/h11,13H,5-9H2,1-4H3/t11-,13+,15+/m1/s1

> <INCHI_KEY>
FBSBGGJQVUYUDB-ZLDLUXBVSA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.357

> <EXACT_MASS>
204.187800773

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
26.17576155652271

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4aS,7aS,7bR)-3,6,6,7b-tetramethyl-1H,2H,4H,4aH,5H,6H,7H,7aH,7bH-cyclobuta[e]indene

> <ALOGPS_LOGP>
4.91

> <JCHEM_LOGP>
4.057500361666667

> <ALOGPS_LOGS>
-4.27

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
65.42779999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.11e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4aS,7aS,7bR)-3,6,6,7b-tetramethyl-1H,2H,4H,4aH,5H,7H,7aH-cyclobuta[e]indene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       3.581   4.497   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.986   0.534   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.023  -1.288   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.953  -0.944   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.376   1.013   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.195  -0.292   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.939   3.250   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.275   1.682   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.110  -0.521   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.400   3.193   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.758   1.946   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.680   1.832   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.038   0.585   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.493   0.158   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.499   0.527   0.000  0.00  0.00           C+0
HETATM   16  H   UNK     0       5.219   1.889   0.000  0.00  0.00           H+0
HETATM   17  H   UNK     0       5.464  -0.844   0.000  0.00  0.00           H+0
CONECT    1   10                                                            
CONECT    2   14                                                            
CONECT    3   14                                                            
CONECT    4   15                                                            
CONECT    5    6   12                                                       
CONECT    6    5   15                                                       
CONECT    7   10   11                                                       
CONECT    8   11   14                                                       
CONECT    9   13   14                                                       
CONECT   10    1    7   12                                                  
CONECT   11    7    8   13   16                                             
CONECT   12    5   10   15                                                  
CONECT   13    9   11   15   17                                             
CONECT   14    2    3    8    9                                             
CONECT   15    4    6   12   13                                             
CONECT   16   11                                                            
CONECT   17   13                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

Synonyms

Value	Source
(4AS,7as,7BR)-3,6,6,7b-tetramethyl-2,4,4a,5,6,7,7a,7b-octahydro-1H-cyclobuta[1,2-e]indene	Kegg
6-Protoilludene	ChEBI
Δ(6)-protoilludene	Generator

Molecular Formula

C₁₅H₂₄

Average Mass

204.357

Monoisotopic Mass

204.187800773

IUPAC Name

(4aS,7aS,7bR)-3,6,6,7b-tetramethyl-1H,2H,4H,4aH,5H,6H,7H,7aH,7bH-cyclobuta[e]indene

Traditional Name

(4aS,7aS,7bR)-3,6,6,7b-tetramethyl-1H,2H,4H,4aH,5H,7H,7aH-cyclobuta[e]indene

CAS Registry Number

Not Available

SMILES

[H][C@@]12CC(C)(C)C[C@]1([H])[C@@]1(C)CCC1=C(C)C2

InChI Identifier

InChI=1S/C15H24/c1-10-7-11-8-14(2,3)9-13(11)15(4)6-5-12(10)15/h11,13H,5-9H2,1-4H3/t11-,13+,15+/m1/s1

InChI Key

FBSBGGJQVUYUDB-ZLDLUXBVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as illudanes and illudins. These are sesquiterpenoids containing either the illudane moiety (based on a 3,6,6,7b-tetramethyl-decahydro-1H-cyclobuta[e]indene ring system), the illudin moiety (2',2',4',6'-tetramethyl-octahydrospiro[cyclopropane-1,5'-indene]), or a derivative thereof.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Illudanes and illudins

Alternative Parents

Substituents

Illudane sesquiterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

carbotricyclic compound (CHEBI:68655 )
sesquiterpene (CHEBI:68655 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.011 g/L	ALOGPS
logP	4.91	ALOGPS
logP	4.06	ChemAxon
logS	-4.3	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	65.43 m³·mol⁻¹	ChemAxon
Polarizability	26.18 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0015373	Farnesyl pyrophosphate	Î”(6)-protoilludene	Delta(6)-protoilludene synthase	Synthesis	RHEA	34755880
MMDBr0015374	Farnesyl pyrophosphate	Î”(6)-protoilludene	Delta(6)-protoilludene synthase	Synthesis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Basidiomycota	10		Metabolic reconstruction

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

C00021459

Chemspider ID

10251938

KEGG Compound ID

C20476

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15939655

PDB ID

Not Available

ChEBI ID

68655

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Î”(6)-protoilludene (MMDBc0004230)

MOL for #<Metabolite:0x00007fa4e4a54660>

3D MOL for #<Metabolite:0x00007fa4e4a54660>

3D SDF for #<Metabolite:0x00007fa4e4a54660>

3D-SDF for #<Metabolite:0x00007fa4e4a54660>

PDB for #<Metabolite:0x00007fa4e4a54660>

3D PDB for #<Metabolite:0x00007fa4e4a54660>

SMILES for #<Metabolite:0x00007fa4e4a54660>

INCHI for #<Metabolite:0x00007fa4e4a54660>

Structure for #<Metabolite:0x00007fa4e4a54660>

3D Structure for #<Metabolite:0x00007fa4e4a54660>