Showing metabocard for (2R,3S,3′S)-2-hydroxyastaxanthin (MMDBc0006905)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-05-15 00:16:03 UTC
Update Date2022-08-31 06:26:24 UTC
Metabolite IDMMDBc0006905
Metabolite Identification
Common Name(2R,3S,3′S)-2-hydroxyastaxanthin
Description(2R,3S,3'S)-2-Hydroxyastaxanthin belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone. Thus, (2R,3S,3's)-2-hydroxyastaxanthin is considered to be an isoprenoid. Based on a literature review very few articles have been published on (2R,3S,3'S)-2-Hydroxyastaxanthin.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007f46c4aa0cc8>


  Mrv1652305152102162D          

 62 63  0  0  1  0            999 V2000
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M  END
Download

3D MOL for #<Metabolite:0x00007f46c4aa0cc8>

Download
3D SDF for #<Metabolite:0x00007f46c4aa0cc8>

  Mrv1652305152102162D          

 62 63  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
MMDBc0006905

> <DATABASE_NAME>
MIME

> <SMILES>
[H]/C(=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])C1=C(C)C(=O)[C@@]([H])(O)[C@]([H])(O)C1(C)C)/C(/[H])=C(\C)/C(/[H])=C(\[H])/C(/[H])=C(\C)/C(/[H])=C(\[H])C1=C(C)C(=O)[C@@]([H])(O)CC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H52O5/c1-26(17-13-19-28(3)21-23-32-30(5)35(42)34(41)25-39(32,7)8)15-11-12-16-27(2)18-14-20-29(4)22-24-33-31(6)36(43)37(44)38(45)40(33,9)10/h11-24,34,37-38,41,44-45H,25H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,26-15+,27-16+,28-19+,29-20+/t34-,37+,38-/m0/s1

> <INCHI_KEY>
FHWKCLRYHASIMG-JXBZEQIMSA-N

> <FORMULA>
C40H52O5

> <MOLECULAR_WEIGHT>
612.851

> <EXACT_MASS>
612.381474774

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
97

> <JCHEM_AVERAGE_POLARIZABILITY>
74.79933619685414

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R,6S)-5,6-dihydroxy-3-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,4,4-trimethylcyclohex-2-en-1-one

> <ALOGPS_LOGP>
6.61

> <JCHEM_LOGP>
7.128386388999999

> <ALOGPS_LOGS>
-5.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.370446565378789

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.324550624366022

> <JCHEM_PKA_STRONGEST_BASIC>
-3.450950991443892

> <JCHEM_POLAR_SURFACE_AREA>
94.83

> <JCHEM_REFRACTIVITY>
197.19010000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.37e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R,6S)-5,6-dihydroxy-3-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,4,4-trimethylcyclohex-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007f46c4aa0cc8>
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PDB for #<Metabolite:0x00007f46c4aa0cc8>
HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -5.335 -35.420   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -12.003 -39.270   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667 -30.800   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -14.670 -43.890   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -8.002 -26.180   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -9.336 -48.510   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.484 -25.143   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.474 -26.857   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -13.864 -47.833   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -14.853 -49.547   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -8.002 -36.960   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -9.336 -37.730   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.335 -32.340   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -12.003 -42.350   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -8.002 -35.420   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -9.336 -39.270   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.668 -33.110   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -10.669 -41.580   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -5.335 -30.800   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -12.003 -43.890   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.001 -28.490   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -13.337 -46.200   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -5.335 -27.720   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -12.003 -46.970   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -4.001 -23.870   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -6.668 -34.650   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -10.669 -40.040   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.001 -30.030   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -13.337 -44.660   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -6.668 -25.410   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -10.669 -49.280   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -5.335 -26.180   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -12.003 -48.510   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -5.335 -23.100   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -6.668 -23.870   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -10.669 -50.820   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -12.003 -51.590   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -13.337 -50.820   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -4.001 -25.410   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -13.337 -49.280   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      -5.335 -21.560   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0      -8.002 -23.100   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0      -9.336 -51.590   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0     -12.003 -53.130   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0     -14.670 -51.590   0.000  0.00  0.00           O+0
HETATM   46  H   UNK     0      -6.668 -37.730   0.000  0.00  0.00           H+0
HETATM   47  H   UNK     0     -10.669 -36.960   0.000  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.001 -33.110   0.000  0.00  0.00           H+0
HETATM   49  H   UNK     0     -13.337 -41.580   0.000  0.00  0.00           H+0
HETATM   50  H   UNK     0      -9.336 -34.650   0.000  0.00  0.00           H+0
HETATM   51  H   UNK     0      -8.002 -40.040   0.000  0.00  0.00           H+0
HETATM   52  H   UNK     0      -8.002 -32.340   0.000  0.00  0.00           H+0
HETATM   53  H   UNK     0      -9.336 -42.350   0.000  0.00  0.00           H+0
HETATM   54  H   UNK     0      -6.668 -30.030   0.000  0.00  0.00           H+0
HETATM   55  H   UNK     0     -10.669 -44.660   0.000  0.00  0.00           H+0
HETATM   56  H   UNK     0      -2.480 -28.729   0.000  0.00  0.00           H+0
HETATM   57  H   UNK     0     -14.858 -45.961   0.000  0.00  0.00           H+0
HETATM   58  H   UNK     0      -6.668 -28.490   0.000  0.00  0.00           H+0
HETATM   59  H   UNK     0     -10.669 -46.200   0.000  0.00  0.00           H+0
HETATM   60  H   UNK     0      -6.668 -22.330   0.000  0.00  0.00           H+0
HETATM   61  H   UNK     0     -13.337 -52.360   0.000  0.00  0.00           H+0
HETATM   62  H   UNK     0     -14.670 -50.050   0.000  0.00  0.00           H+0
CONECT    1   26                                                            
CONECT    2   27                                                            
CONECT    3   28                                                            
CONECT    4   29                                                            
CONECT    5   30                                                            
CONECT    6   31                                                            
CONECT    7   39                                                            
CONECT    8   39                                                            
CONECT    9   40                                                            
CONECT   10   40                                                            
CONECT   11   12   15   46                                                  
CONECT   12   11   16   47                                                  
CONECT   13   17   19   48                                                  
CONECT   14   18   20   49                                                  
CONECT   15   11   26   50                                                  
CONECT   16   12   27   51                                                  
CONECT   17   13   26   52                                                  
CONECT   18   14   27   53                                                  
CONECT   19   13   28   54                                                  
CONECT   20   14   29   55                                                  
CONECT   21   23   28   56                                                  
CONECT   22   24   29   57                                                  
CONECT   23   21   32   58                                                  
CONECT   24   22   33   59                                                  
CONECT   25   34   39                                                       
CONECT   26    1   15   17                                                  
CONECT   27    2   16   18                                                  
CONECT   28    3   19   21                                                  
CONECT   29    4   20   22                                                  
CONECT   30    5   32   35                                                  
CONECT   31    6   33   36                                                  
CONECT   32   23   30   39                                                  
CONECT   33   24   31   40                                                  
CONECT   34   25   35   41   60                                             
CONECT   35   30   34   42                                                  
CONECT   36   31   37   43                                                  
CONECT   37   36   38   44   61                                             
CONECT   38   37   40   45   62                                             
CONECT   39    7    8   25   32                                             
CONECT   40    9   10   33   38                                             
CONECT   41   34                                                            
CONECT   42   35                                                            
CONECT   43   36                                                            
CONECT   44   37                                                            
CONECT   45   38                                                            
CONECT   46   11                                                            
CONECT   47   12                                                            
CONECT   48   13                                                            
CONECT   49   14                                                            
CONECT   50   15                                                            
CONECT   51   16                                                            
CONECT   52   17                                                            
CONECT   53   18                                                            
CONECT   54   19                                                            
CONECT   55   20                                                            
CONECT   56   21                                                            
CONECT   57   22                                                            
CONECT   58   23                                                            
CONECT   59   24                                                            
CONECT   60   34                                                            
CONECT   61   37                                                            
CONECT   62   38                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  126    0
END

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3D PDB for #<Metabolite:0x00007f46c4aa0cc8>
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SMILES for #<Metabolite:0x00007f46c4aa0cc8>
[H]/C(=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])C1=C(C)C(=O)[C@@]([H])(O)[C@]([H])(O)C1(C)C)/C(/[H])=C(\C)/C(/[H])=C(\[H])/C(/[H])=C(\C)/C(/[H])=C(\[H])C1=C(C)C(=O)[C@@]([H])(O)CC1(C)C
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INCHI for #<Metabolite:0x00007f46c4aa0cc8>
InChI=1S/C40H52O5/c1-26(17-13-19-28(3)21-23-32-30(5)35(42)34(41)25-39(32,7)8)15-11-12-16-27(2)18-14-20-29(4)22-24-33-31(6)36(43)37(44)38(45)40(33,9)10/h11-24,34,37-38,41,44-45H,25H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,26-15+,27-16+,28-19+,29-20+/t34-,37+,38-/m0/s1
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SynonymsNot Available
Molecular FormulaC40H52O5
Average Mass612.851
Monoisotopic Mass612.381474774
IUPAC Name(5R,6S)-5,6-dihydroxy-3-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,4,4-trimethylcyclohex-2-en-1-one
Traditional Name(5R,6S)-5,6-dihydroxy-3-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,4,4-trimethylcyclohex-2-en-1-one
CAS Registry NumberNot Available
SMILES
[H]/C(=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])\C(\[H])=C(/C)\C(\[H])=C(/[H])C1=C(C)C(=O)[C@@]([H])(O)[C@]([H])(O)C1(C)C)/C(/[H])=C(\C)/C(/[H])=C(\[H])/C(/[H])=C(\C)/C(/[H])=C(\[H])C1=C(C)C(=O)[C@@]([H])(O)CC1(C)C
InChI Identifier
InChI=1S/C40H52O5/c1-26(17-13-19-28(3)21-23-32-30(5)35(42)34(41)25-39(32,7)8)15-11-12-16-27(2)18-14-20-29(4)22-24-33-31(6)36(43)37(44)38(45)40(33,9)10/h11-24,34,37-38,41,44-45H,25H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,26-15+,27-16+,28-19+,29-20+/t34-,37+,38-/m0/s1
InChI KeyFHWKCLRYHASIMG-JXBZEQIMSA-N