MiMeDB: Showing metabocard for (5S,S)-5-methyl-3-(7-methylnonyl)furan-2(5H)-one (MMDBc0010103)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 02:23:35 UTC

Update Date

2022-08-31 06:31:12 UTC

Metabolite ID

MMDBc0010103

Metabolite Identification

Common Name

(5S,S)-5-methyl-3-(7-methylnonyl)furan-2(5H)-one

Description

(5S,S)-5-methyl-3-(7-methylnonyl)furan-2(5H)-one belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain. Based on a literature review very few articles have been published on (5S,S)-5-methyl-3-(7-methylnonyl)furan-2(5H)-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152104232D          

 19 19  0  0  1  0            999 V2000
   -3.8400    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4110    4.4011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7164    5.8299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1255    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2676    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4468    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9821    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1613    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6966    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    5.2261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3439    5.3031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4110    5.2261    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8960    5.9162    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5902    5.6386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6765    6.4591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0634    7.0111    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4835    6.6306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1255    4.8136    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3453    6.6081    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 12  2  1  1  0  0  0
 12  4  1  0  0  0  0
 12  9  1  0  0  0  0
 13  3  1  1  0  0  0
 13 11  1  0  0  0  0
 14 10  1  0  0  0  0
 14 11  2  0  0  0  0
 15 14  1  0  0  0  0
 16 15  2  0  0  0  0
 17 13  1  0  0  0  0
 17 15  1  0  0  0  0
 12 18  1  6  0  0  0
 13 19  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0010103

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](C)(CC)CCCCCCC1=C[C@]([H])(C)OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O2/c1-4-12(2)9-7-5-6-8-10-14-11-13(3)17-15(14)16/h11-13H,4-10H2,1-3H3/t12-,13-/m0/s1

> <INCHI_KEY>
GGPPVFPMDTYVJM-STQMWFEESA-N

> <FORMULA>
C15H26O2

> <MOLECULAR_WEIGHT>
238.371

> <EXACT_MASS>
238.193280077

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
29.88674213091091

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5S)-5-methyl-3-[(7S)-7-methylnonyl]-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
5.41

> <JCHEM_LOGP>
5.192309519000001

> <ALOGPS_LOGS>
-5.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.470827754881388

> <JCHEM_PKA_STRONGEST_BASIC>
-6.879887748924198

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
71.37989999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.99e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-5-methyl-3-[(7S)-7-methylnonyl]-5H-furan-2-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -7.168   9.755   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.501   8.215   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.804  10.883   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.834  10.525   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.500  10.525   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.834   9.755   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.833   9.755   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.168  10.525   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.167  10.525   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.501   9.755   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.242   9.899   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.501   9.755   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.272  11.044   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.835  10.525   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.996  12.057   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.852  13.087   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       6.502  12.377   0.000  0.00  0.00           O+0
HETATM   18  H   UNK     0      -5.834   8.985   0.000  0.00  0.00           H+0
HETATM   19  H   UNK     0       8.111  12.335   0.000  0.00  0.00           H+0
CONECT    1    4                                                            
CONECT    2   12                                                            
CONECT    3   13                                                            
CONECT    4    1   12                                                       
CONECT    5    6    7                                                       
CONECT    6    5    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   12                                                       
CONECT   10    8   14                                                       
CONECT   11   13   14                                                       
CONECT   12    2    4    9   18                                             
CONECT   13    3   11   17   19                                             
CONECT   14   10   11   15                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   13   15                                                       
CONECT   18   12                                                            
CONECT   19   13                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

Synonyms

Not Available

Molecular Formula

C₁₅H₂₆O₂

Average Mass

238.371

Monoisotopic Mass

238.193280077

IUPAC Name

(5S)-5-methyl-3-[(7S)-7-methylnonyl]-2,5-dihydrofuran-2-one

Traditional Name

(5S)-5-methyl-3-[(7S)-7-methylnonyl]-5H-furan-2-one

CAS Registry Number

Not Available

SMILES

[H][C@](C)(CC)CCCCCCC1=C[C@]([H])(C)OC1=O

InChI Identifier

InChI=1S/C15H26O2/c1-4-12(2)9-7-5-6-8-10-14-11-13(3)17-15(14)16/h11-13H,4-10H2,1-3H3/t12-,13-/m0/s1

InChI Key

GGPPVFPMDTYVJM-STQMWFEESA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Annonaceous acetogenins

Alternative Parents

Substituents

Annonaceae acetogenin skeleton
2-furanone
Dihydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Carbonyl group
Organooxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.002 g/L	ALOGPS
logP	5.41	ALOGPS
logP	5.19	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	13.47	ChemAxon
pKa (Strongest Basic)	-6.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	71.38 m³·mol⁻¹	ChemAxon
Polarizability	29.89 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	1		Metabolic reconstruction

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

17248844

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

16090231

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for (5S,S)-5-methyl-3-(7-methylnonyl)furan-2(5H)-one (MMDBc0010103)

MOL for #<Metabolite:0x00007fdb4c6bd148>

3D MOL for #<Metabolite:0x00007fdb4c6bd148>

3D SDF for #<Metabolite:0x00007fdb4c6bd148>

3D-SDF for #<Metabolite:0x00007fdb4c6bd148>

PDB for #<Metabolite:0x00007fdb4c6bd148>

3D PDB for #<Metabolite:0x00007fdb4c6bd148>

SMILES for #<Metabolite:0x00007fdb4c6bd148>

INCHI for #<Metabolite:0x00007fdb4c6bd148>

Structure for #<Metabolite:0x00007fdb4c6bd148>

3D Structure for #<Metabolite:0x00007fdb4c6bd148>