Showing metabocard for Leptosphaerone C (MMDBc0010876)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-05-15 02:55:21 UTC
Update Date2022-08-31 06:32:24 UTC
Metabolite IDMMDBc0010876
Metabolite Identification
Common NameLeptosphaerone C
DescriptionLeptosphaerone C belongs to the class of organic compounds known as cyclohexenones. Cyclohexenones are compounds containing a cylohexenone moiety, which is a six-membered aliphatic ring that carries a ketone and has one endocyclic double bond. Based on a literature review very few articles have been published on Leptosphaerone C.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007fece400d268>


  Mrv1652305152104552D          

 12 12  0  0  1  0            999 V2000
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2822    1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8125    0.6817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  1  0  0  0  0
  8  2  1  6  0  0  0
  8  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  6  2  0  0  0  0
  7 10  1  6  0  0  0
  8 11  1  1  0  0  0
  7 12  1  1  0  0  0
M  END
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3D MOL for #<Metabolite:0x00007fece400d268>

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3D SDF for #<Metabolite:0x00007fece400d268>

  Mrv1652305152104552D          

 12 12  0  0  1  0            999 V2000
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2822    1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8125    0.6817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  1  0  0  0  0
  8  2  1  6  0  0  0
  8  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  6  2  0  0  0  0
  7 10  1  6  0  0  0
  8 11  1  1  0  0  0
  7 12  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0010876

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]1(O)CC(C)=CC(=O)[C@@]1(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C8H12O3/c1-5-3-6(9)8(2,11)7(10)4-5/h3,7,10-11H,4H2,1-2H3/t7-,8-/m1/s1

> <INCHI_KEY>
JPANATRWCFTRDD-HTQZYQBOSA-N

> <FORMULA>
C8H12O3

> <MOLECULAR_WEIGHT>
156.181

> <EXACT_MASS>
156.078644246

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
15.939950344337328

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R,6S)-5,6-dihydroxy-3,6-dimethylcyclohex-2-en-1-one

> <ALOGPS_LOGP>
-0.58

> <JCHEM_LOGP>
0.21617538433333378

> <ALOGPS_LOGS>
0.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.542730878610158

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.310925756114894

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3426570869993544

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
41.189699999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.65e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R,6S)-5,6-dihydroxy-3,6-dimethylcyclohex-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007fece400d268>
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PDB for #<Metabolite:0x00007fece400d268>
HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.527   2.987   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.517   1.273   0.000  0.00  0.00           O+0
HETATM   12  H   UNK     0       2.667   3.080   0.000  0.00  0.00           H+0
CONECT    1    5                                                            
CONECT    2    8                                                            
CONECT    3    5    6                                                       
CONECT    4    5    7                                                       
CONECT    5    1    3    4                                                  
CONECT    6    3    8    9                                                  
CONECT    7    4    8   10   12                                             
CONECT    8    2    6    7   11                                             
CONECT    9    6                                                            
CONECT   10    7                                                            
CONECT   11    8                                                            
CONECT   12    7                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   24    0
END

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3D PDB for #<Metabolite:0x00007fece400d268>
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SMILES for #<Metabolite:0x00007fece400d268>
[H][C@@]1(O)CC(C)=CC(=O)[C@@]1(C)O
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INCHI for #<Metabolite:0x00007fece400d268>
InChI=1S/C8H12O3/c1-5-3-6(9)8(2,11)7(10)4-5/h3,7,10-11H,4H2,1-2H3/t7-,8-/m1/s1
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Synonyms
ValueSource
(2S,3R)-2,3-Dihydroxy-2,5-dimethylcyclohex-5-enoneMeSH
Molecular FormulaC8H12O3
Average Mass156.181
Monoisotopic Mass156.078644246
IUPAC Name(5R,6S)-5,6-dihydroxy-3,6-dimethylcyclohex-2-en-1-one
Traditional Name(5R,6S)-5,6-dihydroxy-3,6-dimethylcyclohex-2-en-1-one
CAS Registry NumberNot Available
SMILES
[H][C@@]1(O)CC(C)=CC(=O)[C@@]1(C)O
InChI Identifier
InChI=1S/C8H12O3/c1-5-3-6(9)8(2,11)7(10)4-5/h3,7,10-11H,4H2,1-2H3/t7-,8-/m1/s1
InChI KeyJPANATRWCFTRDD-HTQZYQBOSA-N