MiMeDB: Showing metabocard for L-alanyl-L-homoserinyl-L-aspartic acid (MMDBc0013210)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 04:32:59 UTC

Update Date

2022-08-31 06:35:40 UTC

Metabolite ID

MMDBc0013210

Metabolite Identification

Common Name

L-alanyl-L-homoserinyl-L-aspartic acid

Description

SCHEMBL17866815 belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. SCHEMBL17866815 is a very strong basic compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152106322D          

 24 23  0  0  1  0            999 V2000
    0.8250    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3184    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0329    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6039    1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2539    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    4.1250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7474    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    3.3000    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  5  1  1  0  0  0  0
  6  2  1  0  0  0  0
  7  4  1  0  0  0  0
  8  4  1  0  0  0  0
  9  5  1  0  0  0  0
 10  6  1  0  0  0  0
 11  7  1  0  0  0  0
  5 12  1  6  0  0  0
  6 13  1  1  0  0  0
 13  9  2  0  0  0  0
  7 14  1  6  0  0  0
 14 10  2  0  0  0  0
 15  3  1  0  0  0  0
 16  8  2  0  0  0  0
 17  8  1  0  0  0  0
  9 18  1  4  0  0  0
 10 19  1  4  0  0  0
 20 11  2  0  0  0  0
 21 11  1  0  0  0  0
  5 22  1  6  0  0  0
  6 23  1  1  0  0  0
  7 24  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0013210

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](C)(N)C(O)=N[C@@]([H])(CCO)C(O)=N[C@@]([H])(CC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H19N3O7/c1-5(12)9(18)13-6(2-3-15)10(19)14-7(11(20)21)4-8(16)17/h5-7,15H,2-4,12H2,1H3,(H,13,18)(H,14,19)(H,16,17)(H,20,21)/t5-,6-,7-/m0/s1

> <INCHI_KEY>
OGSAEMMXCPDVRH-ACZMJKKPSA-N

> <FORMULA>
C11H19N3O7

> <MOLECULAR_WEIGHT>
305.287

> <EXACT_MASS>
305.122299964

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.85478872805703

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-{[(2S)-2-{[(2S)-2-amino-1-hydroxypropylidene]amino}-1,4-dihydroxybutylidene]amino}butanedioic acid

> <ALOGPS_LOGP>
-3.32

> <JCHEM_LOGP>
-4.195527979151416

> <ALOGPS_LOGS>
-2.51

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
3.620339348779961

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.9970097400966162

> <JCHEM_PKA_STRONGEST_BASIC>
9.56965484536471

> <JCHEM_POLAR_SURFACE_AREA>
186.02999999999997

> <JCHEM_REFRACTIVITY>
68.58000000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.44e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-{[(2S)-2-{[(2S)-2-amino-1-hydroxypropylidene]amino}-1,4-dihydroxybutylidene]amino}butanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0       1.540   7.700   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.461   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.795   3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.206   6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.127   3.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.207   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.206   5.390   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.206   2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.540  -1.540   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      -1.127   7.700   0.000  0.00  0.00           N+0
HETATM   13  N   UNK     0      -1.127   4.620   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       0.206   0.770   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0      -5.128   2.310   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       5.541   0.770   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       4.207  -1.540   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       1.540   4.620   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       1.540   3.080   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       2.874  -2.310   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       0.206  -2.310   0.000  0.00  0.00           O+0
HETATM   22  H   UNK     0       1.540   6.160   0.000  0.00  0.00           H+0
HETATM   23  H   UNK     0      -1.127   1.540   0.000  0.00  0.00           H+0
HETATM   24  H   UNK     0       2.874  -0.770   0.000  0.00  0.00           H+0
CONECT    1    5                                                            
CONECT    2    3    6                                                       
CONECT    3    2   15                                                       
CONECT    4    7    8                                                       
CONECT    5    1    9   12   22                                             
CONECT    6    2   10   13   23                                             
CONECT    7    4   11   14   24                                             
CONECT    8    4   16   17                                                  
CONECT    9    5   13   18                                                  
CONECT   10    6   14   19                                                  
CONECT   11    7   20   21                                                  
CONECT   12    5                                                            
CONECT   13    6    9                                                       
CONECT   14    7   10                                                       
CONECT   15    3                                                            
CONECT   16    8                                                            
CONECT   17    8                                                            
CONECT   18    9                                                            
CONECT   19   10                                                            
CONECT   20   11                                                            
CONECT   21   11                                                            
CONECT   22    5                                                            
CONECT   23    6                                                            
CONECT   24    7                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   46    0
END

Synonyms

Not Available

Molecular Formula

C₁₁H₁₉N₃O₇

Average Mass

305.287

Monoisotopic Mass

305.122299964

IUPAC Name

(2S)-2-{[(2S)-2-{[(2S)-2-amino-1-hydroxypropylidene]amino}-1,4-dihydroxybutylidene]amino}butanedioic acid

Traditional Name

(2S)-2-{[(2S)-2-{[(2S)-2-amino-1-hydroxypropylidene]amino}-1,4-dihydroxybutylidene]amino}butanedioic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](C)(N)C(O)=N[C@@]([H])(CCO)C(O)=N[C@@]([H])(CC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C11H19N3O7/c1-5(12)9(18)13-6(2-3-15)10(19)14-7(11(20)21)4-8(16)17/h5-7,15H,2-4,12H2,1H3,(H,13,18)(H,14,19)(H,16,17)(H,20,21)/t5-,6-,7-/m0/s1

InChI Key

OGSAEMMXCPDVRH-ACZMJKKPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Oligopeptides

Alternative Parents

Substituents

Alpha-oligopeptide
Aspartic acid or derivatives
N-acyl-l-alpha-amino acid
Acyl-l-homoserine
Acyl-homoserine
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Alanine or derivatives
N-substituted-alpha-amino acid
Alpha-amino acid or derivatives
Dicarboxylic acid or derivatives
Fatty amide
Fatty acyl
Fatty acid
N-acyl-amine
Amino acid or derivatives
Carboxamide group
Amino acid
Secondary carboxylic acid amide
Carboxylic acid
Organic oxygen compound
Primary aliphatic amine
Hydrocarbon derivative
Organic nitrogen compound
Carbonyl group
Alcohol
Amine
Organic oxide
Primary amine
Primary alcohol
Organonitrogen compound
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.94 g/L	ALOGPS
logP	-3.3	ALOGPS
logP	-4.2	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	3	ChemAxon
pKa (Strongest Basic)	9.57	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	186.03 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	68.58 m³·mol⁻¹	ChemAxon
Polarizability	28.85 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1		Metabolic reconstruction

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437801

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25150673

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for L-alanyl-L-homoserinyl-L-aspartic acid (MMDBc0013210)

MOL for #<Metabolite:0x00007fed1470d8d0>

3D MOL for #<Metabolite:0x00007fed1470d8d0>

3D SDF for #<Metabolite:0x00007fed1470d8d0>

3D-SDF for #<Metabolite:0x00007fed1470d8d0>

PDB for #<Metabolite:0x00007fed1470d8d0>

3D PDB for #<Metabolite:0x00007fed1470d8d0>

SMILES for #<Metabolite:0x00007fed1470d8d0>

INCHI for #<Metabolite:0x00007fed1470d8d0>

Structure for #<Metabolite:0x00007fed1470d8d0>

3D Structure for #<Metabolite:0x00007fed1470d8d0>