MiMeDB: Showing metabocard for Proviolacein (MMDBc0016601)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 07:13:04 UTC

Update Date

2022-08-31 06:41:16 UTC

Metabolite ID

MMDBc0016601

Metabolite Identification

Common Name

Proviolacein

Description

proviolacein belongs to the class of organic compounds known as hydroxyindoles. These are organic compounds containing an indole moiety that carries a hydroxyl group. proviolacein is an extremely weak basic (essentially neutral) compound (based on its pKa). A hydroxyindole that is 2H-pyrrol-2-one which is substituted at positions 3 and 5 by 1H-indol-3-yl and 5-hydroxy-1H-indol-3-yl groups, respectively.

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004201501092D          

 25 29  0  0  0  0            999 V2000
    7.7378    2.2466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    1.8341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    1.0091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    0.5966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    1.0091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    0.7541    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3249    1.4216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    2.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5549    2.8736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7702    3.1286    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7702    3.9536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028    4.4385    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5549    4.2085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0398    3.5411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    4.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3249    5.6606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    6.3280    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    6.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    6.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    6.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    5.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    4.8356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    5.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    1.8341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    2.2466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 18 23  1  0  0  0  0
  8 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  2  0  0  0  0
  2 25  1  0  0  0  0
M  END


  Mrv1533004201501092D          

 25 29  0  0  0  0            999 V2000
    7.7378    2.2466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    1.8341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    1.0091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    0.5966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    1.0091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    0.7541    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3249    1.4216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    2.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5549    2.8736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7702    3.1286    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7702    3.9536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028    4.4385    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5549    4.2085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0398    3.5411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    4.9931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3249    5.6606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8098    6.3280    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    6.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    6.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    6.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0234    5.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    4.8356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    5.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5944    1.8341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3089    2.2466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 18 23  1  0  0  0  0
  8 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  2  0  0  0  0
  2 25  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0016601

> <DATABASE_NAME>
MIME

> <SMILES>
OC1=CC=C2NC=C(C3=NC(=O)C(=C3)C3=CNC4=CC=CC=C34)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C20H13N3O2/c24-11-5-6-18-13(7-11)16(10-22-18)19-8-14(20(25)23-19)15-9-21-17-4-2-1-3-12(15)17/h1-10,21-22,24H

> <INCHI_KEY>
AEUPUFUMWGIQGG-UHFFFAOYSA-N

> <FORMULA>
C20H13N3O2

> <MOLECULAR_WEIGHT>
327.343

> <EXACT_MASS>
327.100776671

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
35.302365095094096

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-(5-hydroxy-1H-indol-3-yl)-3-(1H-indol-3-yl)-2H-pyrrol-2-one

> <ALOGPS_LOGP>
3.95

> <JCHEM_LOGP>
3.047883388

> <ALOGPS_LOGS>
-4.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.626636873330355

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.121748276168805

> <JCHEM_PKA_STRONGEST_BASIC>
0.22094217659352766

> <JCHEM_POLAR_SURFACE_AREA>
81.23999999999998

> <JCHEM_REFRACTIVITY>
95.80940000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.03e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-(5-hydroxy-1H-indol-3-yl)-3-(1H-indol-3-yl)pyrrol-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  O   UNK     0      14.444   4.194   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      13.110   3.424   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.110   1.884   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.777   1.114   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.443   1.884   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       8.978   1.408   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       8.073   2.654   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.978   3.899   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.502   5.364   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       7.038   5.840   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       7.038   7.380   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.792   8.285   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       8.502   7.856   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.408   6.610   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.978   9.320   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.073  10.566   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       8.978  11.812   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0      10.443  11.336   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.777  12.106   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.110  11.336   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      13.110   9.796   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.777   9.026   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.443   9.796   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.443   3.424   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.777   4.194   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   25                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   24                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   24                                                  
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13    9                                                       
CONECT   15   13   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   15   18                                                  
CONECT   24    8    5   25                                                  
CONECT   25   24    2                                                       
MASTER        0    0    0    0    0    0    0    0   25    0   58    0
END

Synonyms

Not Available

Molecular Formula

C₂₀H₁₃N₃O₂

Average Mass

327.343

Monoisotopic Mass

327.100776671

IUPAC Name

5-(5-hydroxy-1H-indol-3-yl)-3-(1H-indol-3-yl)-2H-pyrrol-2-one

Traditional Name

5-(5-hydroxy-1H-indol-3-yl)-3-(1H-indol-3-yl)pyrrol-2-one

CAS Registry Number

Not Available

SMILES

OC1=CC=C2NC=C(C3=NC(=O)C(=C3)C3=CNC4=CC=CC=C34)C2=C1

InChI Identifier

InChI=1S/C20H13N3O2/c24-11-5-6-18-13(7-11)16(10-22-18)19-8-14(20(25)23-19)15-9-21-17-4-2-1-3-12(15)17/h1-10,21-22,24H

InChI Key

AEUPUFUMWGIQGG-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyindoles. These are organic compounds containing an indole moiety that carries a hydroxyl group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Hydroxyindoles

Direct Parent

Hydroxyindoles

Alternative Parents

Substituents

Hydroxyindole
Indole
1-hydroxy-2-unsubstituted benzenoid
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
N-acylimine
Carboxylic acid derivative
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Azacycle
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Carbonyl group
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.01 g/L	ALOGPS
logP	3.95	ALOGPS
logP	3.05	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	9.12	ChemAxon
pKa (Strongest Basic)	0.22	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	81.24 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	95.81 m³·mol⁻¹	ChemAxon
Polarizability	35.3 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1		Metabolic reconstruction

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

CPD-14321

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135428133

PDB ID

Not Available

ChEBI ID

131916

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Proviolacein (MMDBc0016601)

MOL for #<Metabolite:0x00007f47062d52e0>

3D MOL for #<Metabolite:0x00007f47062d52e0>

3D SDF for #<Metabolite:0x00007f47062d52e0>

3D-SDF for #<Metabolite:0x00007f47062d52e0>

PDB for #<Metabolite:0x00007f47062d52e0>

3D PDB for #<Metabolite:0x00007f47062d52e0>

SMILES for #<Metabolite:0x00007f47062d52e0>

INCHI for #<Metabolite:0x00007f47062d52e0>

Structure for #<Metabolite:0x00007f47062d52e0>

3D Structure for #<Metabolite:0x00007f47062d52e0>