MiMeDB: Showing metabocard for 3-hydroxy-2-(hydroxymethyl)-4-pentadecanoyl-2H-furan-5-one (MMDBc0016688)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 07:16:36 UTC

Update Date

2022-08-31 06:41:27 UTC

Metabolite ID

MMDBc0016688

Metabolite Identification

Common Name

3-hydroxy-2-(hydroxymethyl)-4-pentadecanoyl-2H-furan-5-one

Description

AC1L9SK0 belongs to the class of organic compounds known as butenolides. These are dihydrofurans with a carbonyl group at the C2 carbon atom. AC1L9SK0 is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004171515342D          

 25 25  0  0  0  0            999 V2000
    5.9821   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6966   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4110   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1255   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8400   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5544   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2689   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9834   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6979   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4123   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1268   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8413   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5557   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2702   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9847   -6.7765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9847   -5.9515    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.6991   -7.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4528   -6.8534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6243   -6.0464    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.0049   -7.4665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8253   -7.3803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1609   -6.6266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5924   -8.1810    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7854   -8.0094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1723   -8.5615    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  0  0  0  0
 17 24  1  0  0  0  0
 24 25  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0016688

> <DATABASE_NAME>
MIME

> <SMILES>
CCCCCCCCCCCCCCC(=O)C1=C(O)C(CO)OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H34O5/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16(22)18-19(23)17(15-21)25-20(18)24/h17,21,23H,2-15H2,1H3

> <INCHI_KEY>
ZEPMOPDHHDRDEK-UHFFFAOYSA-N

> <FORMULA>
C20H34O5

> <MOLECULAR_WEIGHT>
354.487

> <EXACT_MASS>
354.240624195

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
42.953096117531096

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-hydroxy-5-(hydroxymethyl)-3-pentadecanoyl-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
5.14

> <JCHEM_LOGP>
5.1876621856666665

> <ALOGPS_LOGS>
-4.91

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.73852086422777

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.45706380908398225

> <JCHEM_PKA_STRONGEST_BASIC>
-3.007141409257094

> <JCHEM_POLAR_SURFACE_AREA>
83.83000000000001

> <JCHEM_REFRACTIVITY>
98.56649999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.37e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-hydroxy-5-(hydroxymethyl)-3-pentadecanoyl-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0      11.167 -12.649   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.500 -13.419   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.834 -12.649   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      15.168 -13.419   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      16.501 -12.649   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      17.835 -13.419   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      19.169 -12.649   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      20.502 -13.419   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      21.836 -12.649   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      23.170 -13.419   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      24.503 -12.649   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      25.837 -13.419   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      27.171 -12.649   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      28.504 -13.419   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      29.838 -12.649   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      29.838 -11.109   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      31.172 -13.419   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      32.579 -12.793   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      32.899 -11.287   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      33.609 -13.937   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      35.141 -13.776   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      35.767 -12.370   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      32.839 -15.271   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      31.333 -14.951   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      30.188 -15.981   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   24                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24                                                       
CONECT   24   23   17   25                                                  
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   50    0
END

Synonyms

Not Available

Molecular Formula

C₂₀H₃₄O₅

Average Mass

354.487

Monoisotopic Mass

354.240624195

IUPAC Name

4-hydroxy-5-(hydroxymethyl)-3-pentadecanoyl-2,5-dihydrofuran-2-one

Traditional Name

4-hydroxy-5-(hydroxymethyl)-3-pentadecanoyl-5H-furan-2-one

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCC(=O)C1=C(O)C(CO)OC1=O

InChI Identifier

InChI=1S/C20H34O5/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16(22)18-19(23)17(15-21)25-20(18)24/h17,21,23H,2-15H2,1H3

InChI Key

ZEPMOPDHHDRDEK-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as butenolides. These are dihydrofurans with a carbonyl group at the C2 carbon atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Dihydrofurans

Sub Class

Furanones

Direct Parent

Butenolides

Alternative Parents

Substituents

2-furanone
Vinylogous acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Ketone
Lactone
Carboxylic acid derivative
Enol
Oxacycle
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxide
Alcohol
Organic oxygen compound
Carbonyl group
Organooxygen compound
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0044 g/L	ALOGPS
logP	5.14	ALOGPS
logP	5.19	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	0.46	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	98.57 m³·mol⁻¹	ChemAxon
Polarizability	42.95 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	2	Human ; Human feces; Human saliva; Human urine; Human supragingival plaque; Human sputum; Human subgingival plaque	Metabolic reconstruction

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

54719891

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for 3-hydroxy-2-(hydroxymethyl)-4-pentadecanoyl-2H-furan-5-one (MMDBc0016688)

MOL for #<Metabolite:0x00007f4704420c00>

3D MOL for #<Metabolite:0x00007f4704420c00>

3D SDF for #<Metabolite:0x00007f4704420c00>

3D-SDF for #<Metabolite:0x00007f4704420c00>

PDB for #<Metabolite:0x00007f4704420c00>

3D PDB for #<Metabolite:0x00007f4704420c00>

SMILES for #<Metabolite:0x00007f4704420c00>

INCHI for #<Metabolite:0x00007f4704420c00>

Structure for #<Metabolite:0x00007f4704420c00>

3D Structure for #<Metabolite:0x00007f4704420c00>