| MMDBm0001199 | Aeromonas veronii B565 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0779406 | Staphylococcus cohnii hu-01 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002378 | Prochlorococcus marinus str. NATL1A | Bacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0001858 | Methylobacterium radiotolerans JCM 2831 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001333 | Burkholderia thailandensis E264 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0558544 | Providencia rettgeri DSM 1131 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001593 | Escherichia coli SE11 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002393 | Pseudomonas fluorescens Pf-5 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001590 | Escherichia coli ATCC 8739 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001188 | Acinetobacter baumannii AB0057 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001854 | Methylibium petroleiphilum PM1 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001336 | Burkholderia ambifaria AMMD | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0649080 | Corynebacterium propinquum DSM 44285 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001517 | Dechloromonas aromatica RCB | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0552432 | Yokenella regensburgei ATCC 43003 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0558116 | Proteus mirabilis ATCC 29906 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002403 | Pseudomonas putida F1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0882069 | Synechocystis sp. PCC 6803 substr. Kazusa | Bacteria | Not Available | Not Available | Not Available | RHEA |
| MMDBm0730043 | Bacillus mycoides DSM 2048 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
