| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028950 | Aspergillus niger | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0096592 | Yarrowia lipolytica CLIB122 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0159119 | Encephalitozoon cuniculi GB-M1 | Fungi | Microsporidia | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0050478 | Botrytis cinerea B05.10 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098956 | Zygosaccharomyces rouxii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0097490 | Ogataea angusta | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0882065 | Thermoproteus tenax Kra 1 | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001891 | Mycobacterium bovis BCG str. Pasteur 1173P2 | Bacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0663594 | Brevibacterium linens BL2 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0786759 | Enterococcus dispar ATCC 51266 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001480 | Comamonas testosteroni CNB-2 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0766588 | Listeria monocytogenes J0161 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0790533 | Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794438 | Streptococcus australis ATCC 700641 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002325 | Butyrivibrio fibrisolvens 16/4 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809204 | Selenomonas ruminantium AC2024 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000067 | Bifidobacterium bifidum PRL2010 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001587 | Escherichia coli APEC O1 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
