| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028950 | Aspergillus niger | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0096592 | Yarrowia lipolytica CLIB122 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0159119 | Encephalitozoon cuniculi GB-M1 | Fungi | Microsporidia | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0050478 | Botrytis cinerea B05.10 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098956 | Zygosaccharomyces rouxii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0097490 | Ogataea angusta | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0882065 | Thermoproteus tenax Kra 1 | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001751 | Lactobacillus plantarum JDM1 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0808774 | Kandleria vitulina DSM 20405 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0547370 | Raoultella planticola ATCC 33531 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0767930 | Paenibacillus graminis | Bacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0808574 | Coprobacillus cateniformis | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0815403 | Ureaplasma urealyticum serovar 8 str. ATCC 27618 | Bacteria | Tenericutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801616 | Anaerofustis stercorihominis DSM 17244 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0799100 | Clostridium sp. 7_2_43FAA | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0792831 | Lactobacillus coryniformis subsp. coryniformis CECT 5711 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Bacteria | Firmicutes | Pig | Metabolic reconstruction | VMH |
