MiMeDB: Showing metabocard for Pectic acid (MMDBc0030374)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 00:05:45 UTC

Update Date

2024-10-11 03:48:38 UTC

Metabolite ID

MMDBc0030374

Metabolite Identification

Common Name

Pectic acid

Description

Pectic acid is also known as polygalacturonic acid. (Wikipedia ) In E. coli, pectic acid can be produced from pectin in a reaction catalyzed by pectinesterase (EC 3.1.1.11). (KEGG)

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
Pectate	Generator
a-D-Galacturonate	HMDB
a-D-Galacturonic acid	HMDB
alpha-D-Galacturonate	HMDB
Α-D-galacturonate	HMDB
Α-D-galacturonic acid	HMDB
alpha-delta-Galactopyranuronic acid	HMDB
alpha-delta-Galacturonic acid	HMDB
alpha-delta-Polygalacturonic acid	HMDB
Calcium pectate	HMDB
Calcium polygalacturonate	HMDB
D-Galacturonan	HMDB
D-Galacturonate	HMDB
delta-Galacturonan	HMDB
delta-Galacturonate	HMDB
delta-Galacturonic acid	HMDB
Galacturonan	HMDB
Galacturonate	HMDB
Poly(1,4-alpha-D-galacturonate)	HMDB
Poly(1,4-alpha-delta-galacturonate)	HMDB
Polygalacturonic acid	HMDB
Sodium pectate	HMDB
Sulfated polygalacturonic acid	HMDB
Polygalacturonic acid, aluminum salt	HMDB
Polygalacturonic acid, homopolymer sodium salt	HMDB
Polygalacturonic acid, sulfated	HMDB
Polygalacturonic acid, calcium salt	HMDB
Polygalacturonic acid homopolymer	HMDB
Homogalacturonan	HMDB
Polygalacturonic acid, homopolymer (D)-isomer	HMDB
Sodium polygalacturonate	HMDB
Pectic acid	MeSH

Molecular Formula

C₆H₁₀O₇

Average Mass

194.1394

Monoisotopic Mass

194.042652674

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2+,3+,4-,6-/m0/s1

InChI Key

AEMOLEFTQBMNLQ-BKBMJHBISA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as glucuronic acid derivatives. Glucuronic acid derivatives are compounds containing a glucuronic acid moiety (or a derivative), which consists of a glucose moiety with the C6 carbon oxidized to a carboxylic acid.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Glucuronic acid derivatives

Alternative Parents

Substituents

Glucuronic acid or derivatives
Beta-hydroxy acid
Hydroxy acid
Pyran
Monosaccharide
Oxane
Hemiacetal
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Polyol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

D-galactopyranuronic acid (CHEBI:33885 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192118	UDP-glucuronosyltransferase 2B4	Enzyme	P06133	Homo sapiens
MMDBp0192135	UDP-glucuronosyltransferase 1-4	Enzyme	P22310	Homo sapiens
MMDBp0192137	UDP-glucuronosyltransferase 2B7	Enzyme	P16662	Homo sapiens
MMDBp0192140	UDP-glucuronosyltransferase 1-1	Enzyme	P22309	Homo sapiens
MMDBp0192141	UDP-glucuronosyltransferase 1-9	Enzyme	O60656	Homo sapiens
MMDBp0192146	UDP-glucuronosyltransferase 1-6	Enzyme	P19224	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal; Human stool	Unknown

Exposure Sources

Source Type	Activity	Data Source	Reference
Drugs	Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	Not Available	U.S. Environmental Protection Agency	CompTox
Domestics	Not Available	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	27543620
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	25037050
Human Feces	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	29808030

External Links

HMDB ID

HMDB0003363

DrugBank ID

DB03511

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB021453

KNApSAcK ID

Not Available

Chemspider ID

393411

KEGG Compound ID

C00470

BioCyc ID

PECTATE

BiGG ID

Not Available

Wikipedia Link

Pectic acid

METLIN ID

6904

PubChem Compound

445929

PDB ID

Not Available

ChEBI ID

33885

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Serban D, Rordorf-Adam C: Binding characteristics of human serum amyloid P component. Scand J Immunol. 1987 Mar;25(3):275-81. doi: 10.1111/j.1365-3083.1987.tb01073.x. [PubMed:3105045 ]
Nakajima N, Ishihara K, Matsuura Y: Dietary-fiber-degrading enzymes from a human intestinal Clostridium and their application to oligosaccharide production from nonstarchy polysaccharides using immobilized cells. Appl Microbiol Biotechnol. 2002 Jul;59(2-3):182-9. doi: 10.1007/s00253-002-1015-7. Epub 2002 May 3. [PubMed:12111144 ]

Showing metabocard for Pectic acid (MMDBc0030374)

MOL for #<Metabolite:0x0000556b6ac0a6b8>

3D MOL for #<Metabolite:0x0000556b6ac0a6b8>

3D SDF for #<Metabolite:0x0000556b6ac0a6b8>

3D-SDF for #<Metabolite:0x0000556b6ac0a6b8>

PDB for #<Metabolite:0x0000556b6ac0a6b8>

3D PDB for #<Metabolite:0x0000556b6ac0a6b8>

SMILES for #<Metabolite:0x0000556b6ac0a6b8>

INCHI for #<Metabolite:0x0000556b6ac0a6b8>

Structure for #<Metabolite:0x0000556b6ac0a6b8>

3D Structure for #<Metabolite:0x0000556b6ac0a6b8>