MiMeDB: Showing metabocard for N-acetyl-D-glucosaminyldiphosphodolichol (MMDBc0033180)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:37:59 UTC

Update Date

2024-04-30 20:02:30 UTC

Metabolite ID

MMDBc0033180

Metabolite Identification

Common Name

N-acetyl-D-glucosaminyldiphosphodolichol

Description

N-acetyl-D-glucosaminyldiphosphodolichol belongs to the class of organic compounds known as polyprenyl phospho carbohydrates. These are polyprenyl phosphates with a carbohydrate moiety attached to it. N-acetyl-D-glucosaminyldiphosphodolichol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02241222422D          

123123  0  0  0  0            999 V2000
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M  END


  Mrv0541 02241222422D          

123123  0  0  0  0            999 V2000
   30.0207  -13.9101    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
MMDBc0033180

> <DATABASE_NAME>
MIME

> <SMILES>
OC[C@H]1O[C@H](OP(O)(=O)OP(O)(=O)OCCC(C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@H](NC(=O)C)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C108H179NO12P2/c1-83(2)42-23-43-84(3)44-24-45-85(4)46-25-47-86(5)48-26-49-87(6)50-27-51-88(7)52-28-53-89(8)54-29-55-90(9)56-30-57-91(10)58-31-59-92(11)60-32-61-93(12)62-33-63-94(13)64-34-65-95(14)66-35-67-96(15)68-36-69-97(16)70-37-71-98(17)72-38-73-99(18)74-39-75-100(19)76-40-77-101(20)78-41-79-102(21)80-81-118-122(114,115)121-123(116,117)120-108-105(109-103(22)111)107(113)106(112)104(82-110)119-108/h42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,102,104-108,110,112-113H,23-41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79-82H2,1-22H3,(H,109,111)(H,114,115)(H,116,117)/b84-44+,85-46+,86-48+,87-50+,88-52-,89-54+,90-56+,91-58+,92-60+,93-62+,94-64+,95-66+,96-68+,97-70-,98-72+,99-74+,100-76+,101-78+/t102?,104-,105-,106-,107-,108-/m1/s1

> <INCHI_KEY>
NCKLCSDHQCYXQT-NFNHYLGRSA-N

> <FORMULA>
C108H179NO12P2

> <MOLECULAR_WEIGHT>
1745.5239

> <EXACT_MASS>
1744.290253221

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_AVERAGE_POLARIZABILITY>
217.68003788177606

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}({[hydroxy({[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy})phosphoryl]oxy})phosphinic acid

> <ALOGPS_LOGP>
9.00

> <JCHEM_LOGP>
29.757511136666665

> <ALOGPS_LOGS>
-6.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.171830961728887

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7457526571666602

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7842632652706848

> <JCHEM_POLAR_SURFACE_AREA>
201.30999999999997

> <JCHEM_REFRACTIVITY>
543.9243999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
67

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.55e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy({hydroxy[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxyphosphoryl}oxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  O   UNK     0      56.039 -25.966   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      52.038 -26.736   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      50.704 -25.966   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      53.371 -25.966   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      49.370 -26.736   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      52.038 -28.276   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      54.705 -26.736   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      48.037 -25.966   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      46.703 -26.736   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      45.369 -25.966   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      44.036 -26.736   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      46.703 -28.276   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      42.702 -25.966   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      41.368 -26.736   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      40.035 -25.966   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      38.701 -26.736   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      41.368 -28.276   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      37.367 -25.966   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      36.034 -26.736   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      34.700 -25.966   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      33.366 -26.736   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      29.365 -25.966   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      36.034 -28.276   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      32.033 -25.966   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      30.699 -26.736   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      28.032 -26.736   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      25.364 -28.276   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      25.364 -26.736   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      24.030 -29.046   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      22.697 -32.896   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      20.029 -37.516   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      14.695 -37.516   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.027 -32.896   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.360 -28.276   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.693 -23.656   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      26.698 -25.966   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.025 -19.036   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      21.363 -33.666   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       1.358 -14.416   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      18.696 -38.286   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      14.695 -35.976   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      12.027 -31.356   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       9.360 -26.736   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       6.693 -22.116   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       4.025 -17.496   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      22.697 -31.356   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       1.358  -9.796   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       1.358 -12.876   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      20.029 -35.976   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      16.028 -38.286   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      13.361 -33.666   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       1.358  -8.256   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      10.694 -29.046   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       8.026 -24.426   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       5.359 -19.806   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       2.692 -15.186   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      -1.309  -5.176   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       0.024 -10.566   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      24.030 -30.586   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      -1.309  -3.636   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      30.699 -28.276   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0       0.024  -5.946   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      21.363 -35.206   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      17.362 -37.516   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      13.361 -35.206   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      10.694 -30.586   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0       8.026 -25.966   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       5.359 -21.346   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       2.692 -16.726   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0       0.024 -12.106   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0      -3.977  -0.556   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0       0.024  -7.486   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      -2.643  -1.326   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0      -3.977   0.984   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      -2.643  -2.866   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      24.030 -25.966   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      -6.644   4.064   0.000  0.00  0.00           C+0
HETATM   78  C   UNK     0      21.363 -30.586   0.000  0.00  0.00           C+0
HETATM   79  C   UNK     0      -5.310   3.294   0.000  0.00  0.00           C+0
HETATM   80  C   UNK     0      18.696 -35.206   0.000  0.00  0.00           C+0
HETATM   81  C   UNK     0      16.028 -39.826   0.000  0.00  0.00           C+0
HETATM   82  C   UNK     0      -5.310   1.754   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0      14.695 -32.896   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0      12.027 -28.276   0.000  0.00  0.00           C+0
HETATM   85  C   UNK     0       9.360 -23.656   0.000  0.00  0.00           C+0
HETATM   86  C   UNK     0       6.693 -19.036   0.000  0.00  0.00           C+0
HETATM   87  C   UNK     0       4.025 -14.416   0.000  0.00  0.00           C+0
HETATM   88  C   UNK     0      -1.309  -9.796   0.000  0.00  0.00           C+0
HETATM   89  C   UNK     0      -6.644   5.604   0.000  0.00  0.00           C+0
HETATM   90  C   UNK     0       1.358  -5.176   0.000  0.00  0.00           C+0
HETATM   91  C   UNK     0      -1.309  -0.556   0.000  0.00  0.00           C+0
HETATM   92  C   UNK     0      -7.978   6.374   0.000  0.00  0.00           C+0
HETATM   93  C   UNK     0      -7.978   7.914   0.000  0.00  0.00           C+0
HETATM   94  C   UNK     0      -3.977   4.064   0.000  0.00  0.00           C+0
HETATM   95  C   UNK     0      -9.312   8.684   0.000  0.00  0.00           C+0
HETATM   96  C   UNK     0      -9.312  10.224   0.000  0.00  0.00           C+0
HETATM   97  C   UNK     0      -6.644   8.684   0.000  0.00  0.00           C+0
HETATM   98  C   UNK     0     -10.645  10.994   0.000  0.00  0.00           C+0
HETATM   99  C   UNK     0     -11.979  10.224   0.000  0.00  0.00           C+0
HETATM  100  C   UNK     0     -11.979   8.684   0.000  0.00  0.00           C+0
HETATM  101  C   UNK     0     -13.313  10.994   0.000  0.00  0.00           C+0
HETATM  102  P   UNK     0      57.372 -26.736   0.000  0.00  0.00           P+0
HETATM  103  O   UNK     0      58.706 -27.506   0.000  0.00  0.00           O+0
HETATM  104  O   UNK     0      56.602 -28.069   0.000  0.00  0.00           O+0
HETATM  105  O   UNK     0      58.142 -25.402   0.000  0.00  0.00           O+0
HETATM  106  P   UNK     0      60.040 -26.736   0.000  0.00  0.00           P+0
HETATM  107  O   UNK     0      61.373 -25.966   0.000  0.00  0.00           O+0
HETATM  108  O   UNK     0      60.810 -28.069   0.000  0.00  0.00           O+0
HETATM  109  O   UNK     0      59.270 -25.402   0.000  0.00  0.00           O+0
HETATM  110  C   UNK     0      61.373 -24.426   0.000  0.00  0.00           C+0
HETATM  111  O   UNK     0      60.040 -23.656   0.000  0.00  0.00           O+0
HETATM  112  C   UNK     0      60.040 -22.116   0.000  0.00  0.00           C+0
HETATM  113  C   UNK     0      61.373 -21.346   0.000  0.00  0.00           C+0
HETATM  114  C   UNK     0      62.707 -22.116   0.000  0.00  0.00           C+0
HETATM  115  C   UNK     0      62.707 -23.656   0.000  0.00  0.00           C+0
HETATM  116  C   UNK     0      58.706 -21.346   0.000  0.00  0.00           C+0
HETATM  117  O   UNK     0      61.373 -19.806   0.000  0.00  0.00           O+0
HETATM  118  O   UNK     0      64.041 -21.346   0.000  0.00  0.00           O+0
HETATM  119  N   UNK     0      64.041 -24.426   0.000  0.00  0.00           N+0
HETATM  120  O   UNK     0      58.706 -19.806   0.000  0.00  0.00           O+0
HETATM  121  C   UNK     0      65.375 -23.656   0.000  0.00  0.00           C+0
HETATM  122  O   UNK     0      66.708 -24.426   0.000  0.00  0.00           O+0
HETATM  123  C   UNK     0      65.375 -22.116   0.000  0.00  0.00           C+0
CONECT    1    7  102                                                       
CONECT    2    3    4    6                                                  
CONECT    3    2    5                                                       
CONECT    4    2    7                                                       
CONECT    5    3    8                                                       
CONECT    6    2                                                            
CONECT    7    1    4                                                       
CONECT    8    5    9                                                       
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10   13                                                       
CONECT   12    9                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15   18                                                       
CONECT   17   14                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21                                                       
CONECT   21   20   24                                                       
CONECT   22   25   26                                                       
CONECT   23   19                                                            
CONECT   24   21   25                                                       
CONECT   25   22   24   61                                                  
CONECT   26   22   36                                                       
CONECT   27   28   29                                                       
CONECT   28   27   36   76                                                  
CONECT   29   27   59                                                       
CONECT   30   38   46                                                       
CONECT   31   40   49                                                       
CONECT   32   41   50                                                       
CONECT   33   42   51                                                       
CONECT   34   43   53                                                       
CONECT   35   44   54                                                       
CONECT   36   26   28                                                       
CONECT   37   45   55                                                       
CONECT   38   30   63                                                       
CONECT   39   48   56                                                       
CONECT   40   31   64                                                       
CONECT   41   32   65                                                       
CONECT   42   33   66                                                       
CONECT   43   34   67                                                       
CONECT   44   35   68                                                       
CONECT   45   37   69                                                       
CONECT   46   30   59   78                                                  
CONECT   47   52   58                                                       
CONECT   48   39   70                                                       
CONECT   49   31   63   80                                                  
CONECT   50   32   64   81                                                  
CONECT   51   33   65   83                                                  
CONECT   52   47   72                                                       
CONECT   53   34   66   84                                                  
CONECT   54   35   67   85                                                  
CONECT   55   37   68   86                                                  
CONECT   56   39   69   87                                                  
CONECT   57   60   62                                                       
CONECT   58   47   70   88                                                  
CONECT   59   29   46                                                       
CONECT   60   57   75                                                       
CONECT   61   25                                                            
CONECT   62   57   72   90                                                  
CONECT   63   38   49                                                       
CONECT   64   40   50                                                       
CONECT   65   41   51                                                       
CONECT   66   42   53                                                       
CONECT   67   43   54                                                       
CONECT   68   44   55                                                       
CONECT   69   45   56                                                       
CONECT   70   48   58                                                       
CONECT   71   73   74                                                       
CONECT   72   52   62                                                       
CONECT   73   71   75   91                                                  
CONECT   74   71   82                                                       
CONECT   75   60   73                                                       
CONECT   76   28                                                            
CONECT   77   79   89                                                       
CONECT   78   46                                                            
CONECT   79   77   82   94                                                  
CONECT   80   49                                                            
CONECT   81   50                                                            
CONECT   82   74   79                                                       
CONECT   83   51                                                            
CONECT   84   53                                                            
CONECT   85   54                                                            
CONECT   86   55                                                            
CONECT   87   56                                                            
CONECT   88   58                                                            
CONECT   89   77   92                                                       
CONECT   90   62                                                            
CONECT   91   73                                                            
CONECT   92   89   93                                                       
CONECT   93   92   95   97                                                  
CONECT   94   79                                                            
CONECT   95   93   96                                                       
CONECT   96   95   98                                                       
CONECT   97   93                                                            
CONECT   98   96   99                                                       
CONECT   99   98  100  101                                                  
CONECT  100   99                                                            
CONECT  101   99                                                            
CONECT  102  103  104  105    1                                             
CONECT  103  102  106                                                       
CONECT  104  102                                                            
CONECT  105  102                                                            
CONECT  106  103  107  108  109                                             
CONECT  107  106  110                                                       
CONECT  108  106                                                            
CONECT  109  106                                                            
CONECT  110  107  111  115                                                  
CONECT  111  110  112                                                       
CONECT  112  111  113  116                                                  
CONECT  113  112  114  117                                                  
CONECT  114  113  115  118                                                  
CONECT  115  114  110  119                                                  
CONECT  116  112  120                                                       
CONECT  117  113                                                            
CONECT  118  114                                                            
CONECT  119  115  121                                                       
CONECT  120  116                                                            
CONECT  121  119  122  123                                                  
CONECT  122  121                                                            
CONECT  123  121                                                            
MASTER        0    0    0    0    0    0    0    0  123    0  246    0
END

Synonyms

Not Available

Molecular Formula

C₁₀₈H₁₇₉NO₁₂P₂

Average Mass

1745.5239

Monoisotopic Mass

1744.290253221

IUPAC Name

{[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}({[hydroxy({[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy})phosphoryl]oxy})phosphinic acid

Traditional Name

[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy({hydroxy[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxyphosphoryl}oxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@H](OP(O)(=O)OP(O)(=O)OCCC(C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@H](NC(=O)C)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C108H179NO12P2/c1-83(2)42-23-43-84(3)44-24-45-85(4)46-25-47-86(5)48-26-49-87(6)50-27-51-88(7)52-28-53-89(8)54-29-55-90(9)56-30-57-91(10)58-31-59-92(11)60-32-61-93(12)62-33-63-94(13)64-34-65-95(14)66-35-67-96(15)68-36-69-97(16)70-37-71-98(17)72-38-73-99(18)74-39-75-100(19)76-40-77-101(20)78-41-79-102(21)80-81-118-122(114,115)121-123(116,117)120-108-105(109-103(22)111)107(113)106(112)104(82-110)119-108/h42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,102,104-108,110,112-113H,23-41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79-82H2,1-22H3,(H,109,111)(H,114,115)(H,116,117)/b84-44+,85-46+,86-48+,87-50+,88-52-,89-54+,90-56+,91-58+,92-60+,93-62+,94-64+,95-66+,96-68+,97-70-,98-72+,99-74+,100-76+,101-78+/t102?,104-,105-,106-,107-,108-/m1/s1

InChI Key

NCKLCSDHQCYXQT-NFNHYLGRSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as polyprenyl phospho carbohydrates. These are polyprenyl phosphates with a carbohydrate moiety attached to it.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Polyprenols

Direct Parent

Polyprenyl phospho carbohydrates

Alternative Parents

Substituents

Polyterpenoid
Polyprenyl phospho carbohydrate
Dolichyl diphosphate
Polyprenyl monophosphate
Polyprenyl phosphate skeleton
N-acyl-alpha-hexosamine
Hexose monosaccharide
Organic pyrophosphate
Monosaccharide phosphate
Monoalkyl phosphate
Alkyl phosphate
Phosphoric acid ester
Oxane
Organic phosphoric acid derivative
Monosaccharide
Acetamide
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.00066 g/L	ALOGPS
logP	9	ALOGPS
logP	29.76	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	1.75	ChemAxon
pKa (Strongest Basic)	-0.78	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	201.31 Å²	ChemAxon
Rotatable Bond Count	67	ChemAxon
Refractivity	543.92 m³·mol⁻¹	ChemAxon
Polarizability	217.68 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0076-9310062300-28dc19222675aae28629	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-08i0-9516020100-bc4bb4f9518437fc8fc6	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0a4l-5900000000-90c2b85ed308702732b7	2019-02-23	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Data Source	Reference
MMDBr0001314	Dolichol phosphate	N-acetyl-D-glucosaminyldiphosphodolichol	dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	VMH	30371894
MMDBr0001316	N-acetyl-D-glucosaminyldiphosphodolichol	N,N'-diacetylchitobiosyldiphosphodolichol	Not Available	VMH	30371894
MMDBr0010573	N-acetyl-D-glucosaminyldiphosphodolichol	N,N'-diacetylchitobiosyldiphosphodolichol	ALG13, UDP-N-acetylglucosaminyltransferase subunit	VMH; KEGG	30371894

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Meissner JD, Naumann A, Mueller WH, Scheibe RJ: Regulation of UDP-N-acetylglucosamine:dolichyl-phosphate N-acetylglucosamine-1-phosphate transferase by retinoic acid in P19 cells. Biochem J. 1999 Mar 1;338 ( Pt 2):561-8. [PubMed:10024536 ]

Showing metabocard for N-acetyl-D-glucosaminyldiphosphodolichol (MMDBc0033180)

MOL for #<Metabolite:0x00007fdb710cd290>

3D MOL for #<Metabolite:0x00007fdb710cd290>

3D SDF for #<Metabolite:0x00007fdb710cd290>

3D-SDF for #<Metabolite:0x00007fdb710cd290>

PDB for #<Metabolite:0x00007fdb710cd290>

3D PDB for #<Metabolite:0x00007fdb710cd290>

SMILES for #<Metabolite:0x00007fdb710cd290>

INCHI for #<Metabolite:0x00007fdb710cd290>

Structure for #<Metabolite:0x00007fdb710cd290>

3D Structure for #<Metabolite:0x00007fdb710cd290>