MiMeDB: Showing metabocard for dolichyl D-mannosyl phosphate (MMDBc0033182)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:38:04 UTC

Update Date

2022-08-31 22:29:31 UTC

Metabolite ID

MMDBc0033182

Metabolite Identification

Common Name

dolichyl D-mannosyl phosphate

Description

Dolichyl D-mannosyl phosphate is involved in dolichyl-diphosphooligosaccharide biosynthesis (N-linked glycosylation) pathway. N-linked glycosylation is an important process found in eukaryotes and archaea, and very rarely in bacteria. During this process certain oligosaccharides are attached to an asparagine residue in the polypeptide chain of the target protein. [Biocyc MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02241222422D          

116116  0  0  0  0            999 V2000
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M  END


  Mrv0541 02241222422D          

116116  0  0  0  0            999 V2000
   36.3774  -13.8796    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
MMDBc0033182

> <DATABASE_NAME>
MIME

> <SMILES>
OC[C@H]1OC(OP(O)(=O)OCCC(C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C106H175O9P/c1-82(2)41-22-42-83(3)43-23-44-84(4)45-24-46-85(5)47-25-48-86(6)49-26-50-87(7)51-27-52-88(8)53-28-54-89(9)55-29-56-90(10)57-30-58-91(11)59-31-60-92(12)61-32-62-93(13)63-33-64-94(14)65-34-66-95(15)67-35-68-96(16)69-36-70-97(17)71-37-72-98(18)73-38-74-99(19)75-39-76-100(20)77-40-78-101(21)79-80-113-116(111,112)115-106-105(110)104(109)103(108)102(81-107)114-106/h41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,101-110H,22-40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78-81H2,1-21H3,(H,111,112)/b83-43+,84-45+,85-47+,86-49+,87-51-,88-53+,89-55+,90-57+,91-59+,92-61+,93-63+,94-65+,95-67+,96-69-,97-71+,98-73+,99-75+,100-77+/t101?,102-,103-,104+,105+,106?/m1/s1

> <INCHI_KEY>
IPAOLVGASNLKMS-RABFXOQVSA-N

> <FORMULA>
C106H175O9P

> <MOLECULAR_WEIGHT>
1624.4921

> <EXACT_MASS>
1623.29737371

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_AVERAGE_POLARIZABILITY>
209.07770914306826

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy}({[(3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid

> <ALOGPS_LOGP>
9.12

> <JCHEM_LOGP>
30.467344809333326

> <ALOGPS_LOGS>
-6.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.209100668724167

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.6167555251888581

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981099581934995

> <JCHEM_POLAR_SURFACE_AREA>
145.91

> <JCHEM_REFRACTIVITY>
521.9501999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
64

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.04e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy[(3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  O   UNK     0      67.904 -25.909   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      64.121 -24.396   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      62.666 -24.900   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      65.285 -25.404   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      61.502 -23.892   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      64.412 -22.884   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      66.740 -24.900   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      60.047 -24.396   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      58.883 -23.388   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      57.427 -23.892   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      56.263 -22.884   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      59.174 -21.876   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      54.808 -23.388   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      53.644 -22.380   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      52.189 -22.884   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      51.025 -21.876   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      53.935 -20.868   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      49.570 -22.380   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      48.405 -21.372   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      46.950 -21.876   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      45.786 -20.868   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      41.712 -20.868   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      48.696 -19.859   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      44.331 -21.372   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      43.167 -20.364   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      40.548 -19.859   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      38.219 -17.843   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      37.928 -19.355   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      37.055 -16.835   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      32.981 -16.835   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      27.742 -15.827   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      22.503 -14.819   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      17.265 -13.811   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.026 -12.802   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.788 -11.794   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      39.092 -20.364   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.549 -10.786   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      31.817 -15.827   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -3.689  -9.778   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      26.578 -14.819   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      21.339 -13.811   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      16.101 -12.802   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      10.862 -11.794   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       5.624 -10.786   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       0.385  -9.778   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      34.436 -16.331   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -7.182  -6.753   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -4.854  -8.770   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      29.197 -15.323   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      23.959 -14.315   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      18.720 -13.306   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -8.346  -5.745   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      13.481 -12.298   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       8.243 -11.290   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       3.004 -10.282   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      -2.234  -9.274   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -12.420  -5.745   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      -7.473  -8.266   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      35.600 -17.339   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -13.585  -4.737   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      43.458 -18.851   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0     -10.965  -5.241   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      30.361 -16.331   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      25.123 -15.323   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      19.884 -14.315   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      14.646 -13.306   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0       9.407 -12.298   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       4.168 -11.290   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      -1.070 -10.282   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      -6.309  -9.274   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0     -17.659  -4.737   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      -9.801  -6.249   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0     -16.204  -4.233   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0     -18.823  -3.729   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0     -15.040  -5.241   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      36.473 -19.859   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0     -22.898  -3.729   0.000  0.00  0.00           C+0
HETATM   78  C   UNK     0      34.727 -14.819   0.000  0.00  0.00           C+0
HETATM   79  C   UNK     0     -21.443  -3.225   0.000  0.00  0.00           C+0
HETATM   80  C   UNK     0      29.488 -13.811   0.000  0.00  0.00           C+0
HETATM   81  C   UNK     0      24.250 -12.802   0.000  0.00  0.00           C+0
HETATM   82  C   UNK     0     -20.278  -4.233   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0      19.011 -11.794   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0      13.772 -10.786   0.000  0.00  0.00           C+0
HETATM   85  C   UNK     0       8.534  -9.778   0.000  0.00  0.00           C+0
HETATM   86  C   UNK     0       3.295  -8.770   0.000  0.00  0.00           C+0
HETATM   87  C   UNK     0      -1.943  -7.761   0.000  0.00  0.00           C+0
HETATM   88  C   UNK     0      -8.928  -8.770   0.000  0.00  0.00           C+0
HETATM   89  C   UNK     0     -24.062  -2.721   0.000  0.00  0.00           C+0
HETATM   90  C   UNK     0     -10.674  -3.729   0.000  0.00  0.00           C+0
HETATM   91  C   UNK     0     -15.913  -2.721   0.000  0.00  0.00           C+0
HETATM   92  C   UNK     0     -25.517  -3.225   0.000  0.00  0.00           C+0
HETATM   93  C   UNK     0     -26.681  -2.217   0.000  0.00  0.00           C+0
HETATM   94  C   UNK     0     -21.151  -1.712   0.000  0.00  0.00           C+0
HETATM   95  C   UNK     0     -28.136  -2.721   0.000  0.00  0.00           C+0
HETATM   96  C   UNK     0     -29.300  -1.712   0.000  0.00  0.00           C+0
HETATM   97  C   UNK     0     -26.390  -0.704   0.000  0.00  0.00           C+0
HETATM   98  C   UNK     0     -30.756  -2.217   0.000  0.00  0.00           C+0
HETATM   99  C   UNK     0     -31.047  -3.729   0.000  0.00  0.00           C+0
HETATM  100  C   UNK     0     -29.882  -4.737   0.000  0.00  0.00           C+0
HETATM  101  C   UNK     0     -32.502  -4.233   0.000  0.00  0.00           C+0
HETATM  102  P   UNK     0      69.360 -25.404   0.000  0.00  0.00           P+0
HETATM  103  O   UNK     0      70.815 -24.900   0.000  0.00  0.00           O+0
HETATM  104  O   UNK     0      69.864 -26.860   0.000  0.00  0.00           O+0
HETATM  105  O   UNK     0      68.856 -23.949   0.000  0.00  0.00           O+0
HETATM  106  C   UNK     0      71.979 -25.909   0.000  0.00  0.00           C+0
HETATM  107  O   UNK     0      73.434 -25.404   0.000  0.00  0.00           O+0
HETATM  108  C   UNK     0      74.598 -26.413   0.000  0.00  0.00           C+0
HETATM  109  C   UNK     0      74.307 -27.925   0.000  0.00  0.00           C+0
HETATM  110  C   UNK     0      72.852 -28.429   0.000  0.00  0.00           C+0
HETATM  111  C   UNK     0      71.688 -27.421   0.000  0.00  0.00           C+0
HETATM  112  O   UNK     0      75.471 -28.933   0.000  0.00  0.00           O+0
HETATM  113  O   UNK     0      70.233 -27.925   0.000  0.00  0.00           O+0
HETATM  114  O   UNK     0      72.561 -29.941   0.000  0.00  0.00           O+0
HETATM  115  C   UNK     0      76.053 -25.909   0.000  0.00  0.00           C+0
HETATM  116  O   UNK     0      77.218 -26.917   0.000  0.00  0.00           O+0
CONECT    1    7  102                                                       
CONECT    2    3    4    6                                                  
CONECT    3    2    5                                                       
CONECT    4    2    7                                                       
CONECT    5    3    8                                                       
CONECT    6    2                                                            
CONECT    7    1    4                                                       
CONECT    8    5    9                                                       
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10   13                                                       
CONECT   12    9                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15   18                                                       
CONECT   17   14                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21                                                       
CONECT   21   20   24                                                       
CONECT   22   25   26                                                       
CONECT   23   19                                                            
CONECT   24   21   25                                                       
CONECT   25   22   24   61                                                  
CONECT   26   22   36                                                       
CONECT   27   28   29                                                       
CONECT   28   27   36   76                                                  
CONECT   29   27   59                                                       
CONECT   30   38   46                                                       
CONECT   31   40   49                                                       
CONECT   32   41   50                                                       
CONECT   33   42   51                                                       
CONECT   34   43   53                                                       
CONECT   35   44   54                                                       
CONECT   36   26   28                                                       
CONECT   37   45   55                                                       
CONECT   38   30   63                                                       
CONECT   39   48   56                                                       
CONECT   40   31   64                                                       
CONECT   41   32   65                                                       
CONECT   42   33   66                                                       
CONECT   43   34   67                                                       
CONECT   44   35   68                                                       
CONECT   45   37   69                                                       
CONECT   46   30   59   78                                                  
CONECT   47   52   58                                                       
CONECT   48   39   70                                                       
CONECT   49   31   63   80                                                  
CONECT   50   32   64   81                                                  
CONECT   51   33   65   83                                                  
CONECT   52   47   72                                                       
CONECT   53   34   66   84                                                  
CONECT   54   35   67   85                                                  
CONECT   55   37   68   86                                                  
CONECT   56   39   69   87                                                  
CONECT   57   60   62                                                       
CONECT   58   47   70   88                                                  
CONECT   59   29   46                                                       
CONECT   60   57   75                                                       
CONECT   61   25                                                            
CONECT   62   57   72   90                                                  
CONECT   63   38   49                                                       
CONECT   64   40   50                                                       
CONECT   65   41   51                                                       
CONECT   66   42   53                                                       
CONECT   67   43   54                                                       
CONECT   68   44   55                                                       
CONECT   69   45   56                                                       
CONECT   70   48   58                                                       
CONECT   71   73   74                                                       
CONECT   72   52   62                                                       
CONECT   73   71   75   91                                                  
CONECT   74   71   82                                                       
CONECT   75   60   73                                                       
CONECT   76   28                                                            
CONECT   77   79   89                                                       
CONECT   78   46                                                            
CONECT   79   77   82   94                                                  
CONECT   80   49                                                            
CONECT   81   50                                                            
CONECT   82   74   79                                                       
CONECT   83   51                                                            
CONECT   84   53                                                            
CONECT   85   54                                                            
CONECT   86   55                                                            
CONECT   87   56                                                            
CONECT   88   58                                                            
CONECT   89   77   92                                                       
CONECT   90   62                                                            
CONECT   91   73                                                            
CONECT   92   89   93                                                       
CONECT   93   92   95   97                                                  
CONECT   94   79                                                            
CONECT   95   93   96                                                       
CONECT   96   95   98                                                       
CONECT   97   93                                                            
CONECT   98   96   99                                                       
CONECT   99   98  100  101                                                  
CONECT  100   99                                                            
CONECT  101   99                                                            
CONECT  102  103  104  105    1                                             
CONECT  103  102  106                                                       
CONECT  104  102                                                            
CONECT  105  102                                                            
CONECT  106  103  107  111                                                  
CONECT  107  106  108                                                       
CONECT  108  107  109  115                                                  
CONECT  109  108  110  112                                                  
CONECT  110  109  111  114                                                  
CONECT  111  110  106  113                                                  
CONECT  112  109                                                            
CONECT  113  111                                                            
CONECT  114  110                                                            
CONECT  115  108  116                                                       
CONECT  116  115                                                            
MASTER        0    0    0    0    0    0    0    0  116    0  232    0
END

Synonyms

Value	Source
Dolichyl D-mannosyl phosphoric acid	Generator

Molecular Formula

C₁₀₆H₁₇₅O₉P

Average Mass

1624.4921

Monoisotopic Mass

1623.29737371

IUPAC Name

{[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy}({[(3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid

Traditional Name

[(6E,10E,14E,18E,22Z,26E,30E,34E,38E,42E,46E,50E,54E,58Z,62E,66E,70E,74E)-3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-nonadecaen-1-yl]oxy[(3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphosphinic acid

CAS Registry Number

Not Available

SMILES

OC[C@H]1OC(OP(O)(=O)OCCC(C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C106H175O9P/c1-82(2)41-22-42-83(3)43-23-44-84(4)45-24-46-85(5)47-25-48-86(6)49-26-50-87(7)51-27-52-88(8)53-28-54-89(9)55-29-56-90(10)57-30-58-91(11)59-31-60-92(12)61-32-62-93(13)63-33-64-94(14)65-34-66-95(15)67-35-68-96(16)69-36-70-97(17)71-37-72-98(18)73-38-74-99(19)75-39-76-100(20)77-40-78-101(21)79-80-113-116(111,112)115-106-105(110)104(109)103(108)102(81-107)114-106/h41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,101-110H,22-40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78-81H2,1-21H3,(H,111,112)/b83-43+,84-45+,85-47+,86-49+,87-51-,88-53+,89-55+,90-57+,91-59+,92-61+,93-63+,94-65+,95-67+,96-69-,97-71+,98-73+,99-75+,100-77+/t101?,102-,103-,104+,105+,106?/m1/s1

InChI Key

IPAOLVGASNLKMS-RABFXOQVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dolichyl monophosphates. These are polyprenyl compounds consisting of a monophosphate group substituted by a dolichyl moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Polyprenols

Direct Parent

Dolichyl monophosphates

Alternative Parents

Substituents

Polyterpenoid
Polyprenyl monophosphate
Dolichyl monophosphate
Hexose monosaccharide
Monosaccharide phosphate
Dialkyl phosphate
Alkyl phosphate
Phosphoric acid ester
Oxane
Organic phosphoric acid derivative
Monosaccharide
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0007 g/L	ALOGPS
logP	9.12	ALOGPS
logP	30.47	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	1.62	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	145.91 Å²	ChemAxon
Rotatable Bond Count	64	ChemAxon
Refractivity	521.95 m³·mol⁻¹	ChemAxon
Polarizability	209.08 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-00di-2530509000-e5f9fef0171eb1f7d2db	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9031101000-bf96349fd299766d8cc4	2019-02-23	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-88f52928fa1d1bc675fd	2019-02-23	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Dolichol monophosphate mannose

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, Backes U, Barreiros T, Bertani I, Bjourson AJ, Bruckner M, Bruschi CV, Carignani G, Castagnoli L, Cerdan E, Clemente ML, Coblenz A, Coglievina M, Coissac E, Defoor E, Del Bino S, Delius H, Delneri D, de Wergifosse P, Dujon B, Kleine K, et al.: The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. Nature. 1997 May 29;387(6632 Suppl):81-4. [PubMed:9169869 ]
Banerjee DK, Carrasquillo EA, Hughey P, Schutzbach JS, Martinez JA, Baksi K: In vitro phosphorylation by cAMP-dependent protein kinase up-regulates recombinant Saccharomyces cerevisiae mannosylphosphodolichol synthase. J Biol Chem. 2005 Feb 11;280(6):4174-81. doi: 10.1074/jbc.M406962200. Epub 2004 Nov 17. [PubMed:15548536 ]
Lamani E, Mewbourne RB, Fletcher DS, Maltsev SD, Danilov LL, Veselovsky VV, Lozanova AV, Grigorieva NY, Pinsker OA, Xing J, Forsee WT, Cheung HC, Schutzbach JS, Shibaev VN, Jedrzejas MJ: Structural studies and mechanism of Saccharomyces cerevisiae dolichyl-phosphate-mannose synthase: insights into the initial step of synthesis of dolichyl-phosphate-linked oligosaccharide chains in membranes of endoplasmic reticulum. Glycobiology. 2006 Jul;16(7):666-78. doi: 10.1093/glycob/cwj104. Epub 2006 Mar 20. [PubMed:16549409 ]
Herrgard MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Bluthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novere N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasic I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttila M, Klipp E, Palsson BO, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB: A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. [PubMed:18846089 ]
Authors unspecified: Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 2011 Jan;39(Database issue):D214-9. doi: 10.1093/nar/gkq1020. Epub 2010 Nov 4. [PubMed:21051339 ]
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Showing metabocard for dolichyl D-mannosyl phosphate (MMDBc0033182)

MOL for #<Metabolite:0x00007fdb5953c7f8>

3D MOL for #<Metabolite:0x00007fdb5953c7f8>

3D SDF for #<Metabolite:0x00007fdb5953c7f8>

3D-SDF for #<Metabolite:0x00007fdb5953c7f8>

PDB for #<Metabolite:0x00007fdb5953c7f8>

3D PDB for #<Metabolite:0x00007fdb5953c7f8>

SMILES for #<Metabolite:0x00007fdb5953c7f8>

INCHI for #<Metabolite:0x00007fdb5953c7f8>

Structure for #<Metabolite:0x00007fdb5953c7f8>

3D Structure for #<Metabolite:0x00007fdb5953c7f8>