MiMeDB: Showing metabocard for Cyanidin (MMDBc0033612)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:55:51 UTC

Update Date

2024-04-30 20:13:47 UTC

Metabolite ID

MMDBc0033612

Metabolite Identification

Common Name

Cyanidin

Description

Cyanidin, also known as cyanidin chloride (CAS: 528-58-5), belongs to the class of organic compounds known as 7-hydroxyflavonoids. These are flavonoids that bear one hydroxyl group at the C-7 position of the flavonoid skeleton. Thus, cyanidin is considered to be a flavonoid lipid molecule. Cyanidin is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Cyanidin (and its glycosides) is the most commonly occurring of the anthocyanins, a widespread group of pigments responsible for the red-blue colour of many fruits and vegetables (PMID: 14711454 ). BioTransformer predicts that cyanidin is a product of cyanidin 3-glucoside metabolism via a glycoside-hydrolysis reaction occurring in human gut microbiota and catalyzed by the EC.3.2.1.X enzyme (PMID: 30612223 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0002708
     RDKit          3D
Cyanidin
 32 34  0  0  0  0  0  0  0  0999 V2000
   -4.2955    3.1062   -0.5904 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6302    1.9102   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3926    0.7757   -0.2484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8213   -0.4786   -0.0223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6229   -1.5956    0.0908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4592   -0.5716    0.0832 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8205   -1.7695    0.3053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4268   -1.7516    0.3963 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2054   -2.9377    0.6163 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2874   -0.6017    0.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7466   -0.4882    0.3535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6360   -1.4911    0.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0212   -1.2506    0.6205 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5299    0.0163    0.4652 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9043    0.2563    0.5217 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6431    1.0486    0.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1751    2.3182    0.0971 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.7870    0.2002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4178    0.4909    0.0615 O   0  0  0  0  0  3  0  0  0  0  0  0
   -1.6833    0.5714   -0.0356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2675    1.8254   -0.2625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8375    3.9923   -0.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4783    0.7872   -0.3231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3659   -2.5313    0.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3809   -2.6812    0.4040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3172   -3.7848    0.7078 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2778   -2.4921    0.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6877   -2.0831    0.7898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2619    1.1923    0.4058 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5324    3.0903   -0.0616 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6556    1.6329    0.0301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6496    2.7078   -0.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  2  0
 10 19  2  0
 19 20  1  0
 20 21  2  0
 21  2  1  0
 20  6  1  0
 18 11  1  0
  1 22  1  0
  3 23  1  0
  5 24  1  0
  7 25  1  0
  9 26  1  0
 12 27  1  0
 13 28  1  0
 15 29  1  0
 17 30  1  0
 18 31  1  0
 21 32  1  0
M  CHG  1  19   1
M  END


  Mrv1652304222019062D          

 21 23  0  0  0  0            999 V2000
    1.0988   -1.4293    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2422    0.2404    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8132    2.2829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2422    1.4580    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7851    0.2205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4997   -0.1919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4997   -1.0169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852   -1.4294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852   -2.2544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5277    1.0455    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8133    1.4580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0987    1.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0987    0.2205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8132   -0.1920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5277    0.2205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3757   -0.1918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3387    0.2205    0.0000 O   0  3  0  0  0  0  0  0  0  0  0  0
   -1.0532   -0.1919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0533   -1.0169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3388   -1.4294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3757   -1.0168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  2  6  1  0  0  0  0
  8  9  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 10  1  0  0  0  0
  3 11  1  0  0  0  0
  4 10  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 16 13  1  0  0  0  0
  1 21  1  0  0  0  0
 18  5  2  0  0  0  0
  8 19  2  0  0  0  0
M  CHG  1  17   1
M  END
> <DATABASE_ID>
MMDBc0033612

> <DATABASE_NAME>
MIME

> <SMILES>
OC1=CC(O)=C2C=C(O)C(=[O+]C2=C1)C1=CC(O)=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H10O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-6H,(H4-,16,17,18,19,20)/p+1

> <INCHI_KEY>
VEVZSMAEJFVWIL-UHFFFAOYSA-O

> <FORMULA>
C15H11O6

> <MOLECULAR_WEIGHT>
287.2442

> <EXACT_MASS>
287.055563084

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
28.088202763192164

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-2H-chromen-2-ylium

> <ALOGPS_LOGP>
2.41

> <JCHEM_LOGP>
-0.7986674006666667

> <ALOGPS_LOGS>
-3.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.051890603823598

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.469078880289808

> <JCHEM_PKA_STRONGEST_BASIC>
-2.910543538519334

> <JCHEM_POLAR_SURFACE_AREA>
114.29

> <JCHEM_REFRACTIVITY>
74.1603

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.89e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-2H-chromen-2-ylium

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0002708
     RDKit          3D
Cyanidin
 32 34  0  0  0  0  0  0  0  0999 V2000
   -4.2955    3.1062   -0.5904 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6302    1.9102   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3926    0.7757   -0.2484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8213   -0.4786   -0.0223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6229   -1.5956    0.0908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4592   -0.5716    0.0832 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8205   -1.7695    0.3053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4268   -1.7516    0.3963 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2054   -2.9377    0.6163 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2874   -0.6017    0.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7466   -0.4882    0.3535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6360   -1.4911    0.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0212   -1.2506    0.6205 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5299    0.0163    0.4652 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9043    0.2563    0.5217 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6431    1.0486    0.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1751    2.3182    0.0971 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.7870    0.2002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4178    0.4909    0.0615 O   0  0  0  0  0  3  0  0  0  0  0  0
   -1.6833    0.5714   -0.0356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2675    1.8254   -0.2625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8375    3.9923   -0.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4783    0.7872   -0.3231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3659   -2.5313    0.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3809   -2.6812    0.4040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3172   -3.7848    0.7078 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2778   -2.4921    0.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6877   -2.0831    0.7898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2619    1.1923    0.4058 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5324    3.0903   -0.0616 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6556    1.6329    0.0301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6496    2.7078   -0.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  2  0
 10 19  2  0
 19 20  1  0
 20 21  2  0
 21  2  1  0
 20  6  1  0
 18 11  1  0
  1 22  1  0
  3 23  1  0
  5 24  1  0
  7 25  1  0
  9 26  1  0
 12 27  1  0
 13 28  1  0
 15 29  1  0
 17 30  1  0
 18 31  1  0
 21 32  1  0
M  CHG  1  19   1
M  END

HEADER    PROTEIN                                 22-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-APR-20         0                                  
HETATM    1  O   UNK     0       2.051  -2.668   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      -6.052   0.449   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0       3.385   4.261   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       6.052   2.722   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -3.332   0.412   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.666  -0.358   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.666  -1.898   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.332  -2.668   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -3.332  -4.208   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.718   1.952   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.385   2.722   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.051   1.951   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.051   0.412   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.385  -0.358   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.718   0.412   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.701  -0.358   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -0.632   0.412   0.000  0.00  0.00           O+1
HETATM   18  C   UNK     0      -1.966  -0.358   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.966  -1.898   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.632  -2.668   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.701  -1.898   0.000  0.00  0.00           C+0
CONECT    1   21                                                            
CONECT    2    6                                                            
CONECT    3   11                                                            
CONECT    4   10                                                            
CONECT    5    6   18                                                       
CONECT    6    5    7    2                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   19                                                  
CONECT    9    8                                                            
CONECT   10   11   15    4                                                  
CONECT   11   10   12    3                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14   10                                                       
CONECT   16   21   17   13                                                  
CONECT   17   16   18                                                       
CONECT   18   19   17    5                                                  
CONECT   19   18   20    8                                                  
CONECT   20   19   21                                                       
CONECT   21   20   16    1                                                  
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

COMPND    HMDB0002708
HETATM    1  O1  UNL     1      -4.295   3.106  -0.590  1.00  0.00           O  
HETATM    2  C1  UNL     1      -3.630   1.910  -0.367  1.00  0.00           C  
HETATM    3  C2  UNL     1      -4.393   0.776  -0.248  1.00  0.00           C  
HETATM    4  C3  UNL     1      -3.821  -0.479  -0.022  1.00  0.00           C  
HETATM    5  O2  UNL     1      -4.623  -1.596   0.091  1.00  0.00           O  
HETATM    6  C4  UNL     1      -2.459  -0.572   0.083  1.00  0.00           C  
HETATM    7  C5  UNL     1      -1.820  -1.770   0.305  1.00  0.00           C  
HETATM    8  C6  UNL     1      -0.427  -1.752   0.396  1.00  0.00           C  
HETATM    9  O3  UNL     1       0.205  -2.938   0.616  1.00  0.00           O  
HETATM   10  C7  UNL     1       0.287  -0.602   0.272  1.00  0.00           C  
HETATM   11  C8  UNL     1       1.747  -0.488   0.353  1.00  0.00           C  
HETATM   12  C9  UNL     1       2.636  -1.491   0.563  1.00  0.00           C  
HETATM   13  C10 UNL     1       4.021  -1.251   0.620  1.00  0.00           C  
HETATM   14  C11 UNL     1       4.530   0.016   0.465  1.00  0.00           C  
HETATM   15  O4  UNL     1       5.904   0.256   0.522  1.00  0.00           O  
HETATM   16  C12 UNL     1       3.643   1.049   0.251  1.00  0.00           C  
HETATM   17  O5  UNL     1       4.175   2.318   0.097  1.00  0.00           O  
HETATM   18  C13 UNL     1       2.302   0.787   0.200  1.00  0.00           C  
HETATM   19  O6  UNL     1      -0.418   0.491   0.062  1.00  0.00           O1+
HETATM   20  C14 UNL     1      -1.683   0.571  -0.036  1.00  0.00           C  
HETATM   21  C15 UNL     1      -2.267   1.825  -0.262  1.00  0.00           C  
HETATM   22  H1  UNL     1      -3.837   3.992  -0.692  1.00  0.00           H  
HETATM   23  H2  UNL     1      -5.478   0.787  -0.323  1.00  0.00           H  
HETATM   24  H3  UNL     1      -4.366  -2.531   0.248  1.00  0.00           H  
HETATM   25  H4  UNL     1      -2.381  -2.681   0.404  1.00  0.00           H  
HETATM   26  H5  UNL     1      -0.317  -3.785   0.708  1.00  0.00           H  
HETATM   27  H6  UNL     1       2.278  -2.492   0.689  1.00  0.00           H  
HETATM   28  H7  UNL     1       4.688  -2.083   0.790  1.00  0.00           H  
HETATM   29  H8  UNL     1       6.262   1.192   0.406  1.00  0.00           H  
HETATM   30  H9  UNL     1       3.532   3.090  -0.062  1.00  0.00           H  
HETATM   31  H10 UNL     1       1.656   1.633   0.030  1.00  0.00           H  
HETATM   32  H11 UNL     1      -1.650   2.708  -0.353  1.00  0.00           H  
CONECT    1    2   22
CONECT    2    3    3   21
CONECT    3    4   23
CONECT    4    5    6    6
CONECT    5   24
CONECT    6    7   20
CONECT    7    8    8   25
CONECT    8    9   10
CONECT    9   26
CONECT   10   11   19   19
CONECT   11   12   12   18
CONECT   12   13   27
CONECT   13   14   14   28
CONECT   14   15   16
CONECT   15   29
CONECT   16   17   18   18
CONECT   17   30
CONECT   18   31
CONECT   19   20
CONECT   20   21   21
CONECT   21   32
END

HMDB0002708
     RDKit          3D
Cyanidin
 32 34  0  0  0  0  0  0  0  0999 V2000
   -4.2955    3.1062   -0.5904 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6302    1.9102   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3926    0.7757   -0.2484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8213   -0.4786   -0.0223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6229   -1.5956    0.0908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4592   -0.5716    0.0832 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8205   -1.7695    0.3053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4268   -1.7516    0.3963 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2054   -2.9377    0.6163 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2874   -0.6017    0.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7466   -0.4882    0.3535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6360   -1.4911    0.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0212   -1.2506    0.6205 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5299    0.0163    0.4652 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9043    0.2563    0.5217 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6431    1.0486    0.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1751    2.3182    0.0971 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025    0.7870    0.2002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4178    0.4909    0.0615 O   0  0  0  0  0  3  0  0  0  0  0  0
   -1.6833    0.5714   -0.0356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2675    1.8254   -0.2625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8375    3.9923   -0.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4783    0.7872   -0.3231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3659   -2.5313    0.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3809   -2.6812    0.4040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3172   -3.7848    0.7078 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2778   -2.4921    0.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6877   -2.0831    0.7898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2619    1.1923    0.4058 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5324    3.0903   -0.0616 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6556    1.6329    0.0301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6496    2.7078   -0.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  2  0
 10 19  2  0
 19 20  1  0
 20 21  2  0
 21  2  1  0
 20  6  1  0
 18 11  1  0
  1 22  1  0
  3 23  1  0
  5 24  1  0
  7 25  1  0
  9 26  1  0
 12 27  1  0
 13 28  1  0
 15 29  1  0
 17 30  1  0
 18 31  1  0
 21 32  1  0
M  CHG  1  19   1
M  END

Synonyms

Value	Source
2-(3,4-Dihydroxyphenyl)-3,5,7-trihydroxy-1-benzopyrylium	ChEBI
2-(3,4-Dihydroxyphenyl)-3,5,7-trihydroxychromenylium	ChEBI
3,3',4',5,7-Pentahydroxyflavylium	ChEBI
3,5,7,3',4'-Pentahydroxyflavylium	ChEBI
Cyanidine	ChEBI
Cyanidol	ChEBI
3,3',4',5,7-Pentahydroxyflavylium chloride	Kegg
Chlorure de 3,3',4',5,7-pentahydroxyflavylium	Kegg
3,3',4',5,7-Pentahydroxyflavyliumchlorid	Kegg
2-(3,4-Dihydroxyphenyl)-3,5,7-trihydroxy-1-benzopyrylium chloride	Kegg
3,3',4',5,7-Pentahydroxy-2-phenylbenzopyrylium chloride	Kegg
Cyanidin chloride	Kegg
Cyanidol chloride	Kegg
IdB 1027	Kegg
Cyanidin ion	MeSH
1-Benzopyrylium, 2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-, chloride	MeSH
2-(3,4-Dihydroxyphenyl) chromenylium-3,5,7-triol	MeSH
Flavylium, 3,3',4',5,7-pentahydroxy-, chloride	MeSH
1-Benzopyrylium, 2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-, chloride (1:1)	MeSH
Cyanidin cation	MeSH
3,5,7,3’,4’-Pentahydroxyflavylium	HMDB
Cyanidin	HMDB

Molecular Formula

C₁₅H₁₁O₆

Average Mass

287.2442

Monoisotopic Mass

287.055563084

IUPAC Name

2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-2H-chromen-2-ylium

Traditional Name

2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-2H-chromen-2-ylium

CAS Registry Number

528-58-5

SMILES

OC1=CC(O)=C2C=C(O)C(=[O+]C2=C1)C1=CC(O)=C(O)C=C1

InChI Identifier

InChI=1S/C15H10O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-6H,(H4-,16,17,18,19,20)/p+1

InChI Key

VEVZSMAEJFVWIL-UHFFFAOYSA-O

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 7-hydroxyflavonoids. These are flavonoids that bear one hydroxyl group at the C-7 position of the flavonoid skeleton.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Hydroxyflavonoids

Direct Parent

7-hydroxyflavonoids

Alternative Parents

Substituents

3'-hydroxyflavonoid
3-hydroxyflavonoid
4'-hydroxyflavonoid
5-hydroxyflavonoid
7-hydroxyflavonoid
Anthocyanidin
Benzopyran
1-benzopyran
Catechol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Heteroaromatic compound
Organoheterocyclic compound
Oxacycle
Polyol
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Organic cation
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

anthocyanidin cation (CHEBI:27843 )
Anthocyanidins (C05905 )
Anthocyanidins and anthocyanins (C05905 )
Anthocyanidins (LMPK12010002 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.049 g/L	ALOGPS
logP	2.41	ALOGPS
logP	-0.8	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	6.47	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	114.29 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	74.16 m³·mol⁻¹	ChemAxon
Polarizability	28.09 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0abi-0690000000-173d2265dcd29fa12c94	2016-09-22	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS ( TMS) - 70eV, Positive	splash10-001i-2062095000-78127582ff2f81e09993	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QFT 20V, positive	splash10-000i-0190000000-5ab24abbf0384667d604	2020-07-24	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-IT 20V, positive	splash10-000i-0390000000-cb44415a595e007f6f39	2020-07-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-000i-0090000000-0a9fc784dd803d3a889e	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-000i-0090000000-3284da347edb43bf4585	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-01ti-0970000000-ffb2d72fad14ec3d596a	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-000i-0090000000-b5bd359053422415d91a	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-000i-0090000000-c2b4878a408c4329c697	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-057i-4950000000-95db0e67894990e7b23a	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-000i-0090000000-3a339036b06ba224499c	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-000i-0090000000-69ffb72b05a05d89dbde	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-014i-0190000000-dc7daae8e2bac54969a1	2021-09-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-25	View Spectrum

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Blood
Fibroblasts
Kidney
Urine

Tissue Locations

Fibroblasts
Kidney

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0191942	Catechol O-methyltransferase	Unknown	P21964	Homo sapiens
MMDBp0192140	UDP-glucuronosyltransferase 1-1	Enzyme	P22309	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference
Animal		Chondrus crispus	FooDB	31437929
Animal		Laminaria	FooDB	31437929
Animal		Haliotis	FooDB	31437929
Animal		Strombidae	FooDB	31437929
Animal		Clupea harengus harengus	FooDB	31437929
Animal		Undaria pinnatifida	FooDB	31437929
Animal		Peprilus triacanthus	FooDB	31437929
Animal		Rhodophyta	FooDB	31437929
Animal		Myoxocephalus	FooDB	31437929
Animal		Eucheuma	FooDB	31437929
Animal		Saccharina japonica	FooDB	31437929
Animal		Spirulina	FooDB	31437929
Animal		Lota lota	FooDB	31437929
Animal		Porphyra umbilicalis	FooDB	31437929
Food			FooDB	31437929
Food			FooDB	31437929
Plant		Helianthus annuus	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant	Plant	Actinidia chinensis	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant		Pinus edulis	FooDB	31437929
Plant		Passiflora edulis	FooDB	31437929
Plant	Tea		FooDB	31437929
Plant		Zingiber officinale	FooDB	31437929
Plant		Opuntia macrorhiza	FooDB	31437929
Plant		Cucurbita pepo var. clypeata	FooDB	31437929
Plant		Manilkara zapota	FooDB	31437929
Plant	Nut	Prunus dulcis	FooDB	31437929
Plant		Sambucus nigra	FooDB	31437929
Plant		Corylus	FooDB	31437929
Plant		Malus	FooDB	31437929
Plant	Flower	Pisum sativum	FooDB	31437929
Plant		Juglans	FooDB	31437929
Plant		Petroselinum crispum	FooDB	31437929
Plant		Apium graveolens	FooDB	31437929
Plant		Allium cepa	FooDB	31437929
Plant		Mangifera indica	FooDB	31437929
Plant		Illicium verum	FooDB	31437929
Plant	Plant	Borago officinalis	FooDB	31437929
Plant		Chamaemelum nobile	FooDB	31437929
Plant			FooDB	31437929
Plant	Fruit	Ribes nigrum	FooDB	31437929
Plant		Auricularia auricula-judae	FooDB	31437929
Plant	Fruit	Pyrus communis	FooDB	31437929
Plant		Attalea speciosa	FooDB	31437929
Plant		Melissa officinalis	FooDB	31437929
Plant		Juglans ailanthifolia	FooDB	31437929
Plant		Hippophae rhamnoides	FooDB	31437929
Plant		Spinacia oleracea	FooDB	31437929
Plant		Polygonum alpinum	FooDB	31437929
Plant		Brassica juncea	FooDB	31437929
Plant	Flower	Linum usitatissimum	FooDB	31437929
Plant		Carica papaya	FooDB	31437929
Plant		Pediomelum esculentum	FooDB	31437929
Plant	Fruit	Punica granatum	FooDB	31437929
Plant	Nut	Pinus edulis	FooDB	31437929
Plant	Fruit	Ribes nigrum	FooDB	31437929
Plant		Auricularia polytricha	FooDB	31437929
Plant		Camellia oleifera	FooDB	31437929
Plant	Fruit	Prunus cerasus	FooDB	31437929
Plant		Thymus vulgaris	FooDB	31437929
Plant		Chrysanthemum coronarium	FooDB	31437929
Plant		Eleocharis dulcis	FooDB	31437929
Plant	Fruit	Rubus idaeus	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Pimenta dioica	FooDB	31437929
Plant		Medicago sativa	FooDB	31437929
Plant		Vigna mungo	FooDB	31437929
Plant	Fruit	Prunus cerasus	FooDB	31437929
Plant	Leaves	Juglans regia	FooDB	31437929
Plant		Rubus arcticus	FooDB	31437929
Plant		Agaricus bisporus	FooDB	31437929
Plant	Juice	Ribes nigrum	FooDB	31437929
Plant	Nut	Corylus	FooDB	31437929
Plant		Hibiscus sabdariffa	FooDB	31437929
Plant		Origanum majorana	FooDB	31437929
Plant	Juice	Ribes nigrum	FooDB	31437929
Plant	Root	Raphanus sativus	FooDB	31437929
Plant		Prunus persica	FooDB	31437929
Plant		Cajanus cajan	FooDB	31437929
Plant		Rumex articus	FooDB	31437929
Plant		Armoracia rusticana	FooDB	31437929
Plant	Fruit	Hippophae rhamnoides	FooDB	31437929
Plant		Foeniculum vulgare	FooDB	31437929
Plant		Benincasa hispida	FooDB	31437929
Plant		Brassica oleracea var. gongylodes	FooDB	31437929
Plant		Cucurbita pepo var. cylindrica	FooDB	31437929
Plant		Canarium ovatum	FooDB	31437929
Plant		Ribes aureum var. villosum	FooDB	31437929
Plant	Fruit	Prunus cerasus	FooDB	31437929
Plant		Brassica oleracea var. gemmifera	FooDB	31437929
Plant		Phoenix dactylifera	FooDB	31437929
Plant		Vaccinium macrocarpon	FooDB	31437929
Plant		Arctium lappa	FooDB	31437929
Plant		Juglans cinerea	FooDB	31437929
Plant		Rosmarinus officinalis	FooDB	31437929
Plant		Brassica ruvo	FooDB	31437929
Plant	Tea		FooDB	31437929
Plant		Artocarpus altilis	FooDB	31437929
Plant		Eruca vesicaria ssp. sativa	FooDB	31437929
Plant		Citrus x paradisi	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant		Ficus carica	FooDB	31437929
Plant	Juice	Fragaria x ananassa	FooDB	31437929
Plant		Cynara scolymus	FooDB	31437929
Plant		Vigna unguiculata	FooDB	31437929
Plant		Lentinus edodes	FooDB	31437929
Plant		Cyathea	FooDB	31437929
Plant		Metroxylon sagu	FooDB	31437929
Plant		Vitis rotundifolia	FooDB	31437929
Plant		Brosimum alicastrum	FooDB	31437929
Plant		Beta vulgaris var. rubra	FooDB	31437929
Plant	Fruit	Vaccinium macrocarpon	FooDB	31437929
Plant		Lepidium sativum	FooDB	31437929
Plant		Castanea mollissima	FooDB	31437929
Plant	Plant	Prunus domestica	FooDB	31437929
Plant	Nut	Pistacia vera	FooDB	31437929
Plant		Helianthus tuberosus	FooDB	31437929
Plant		Morus	FooDB	31437929
Plant		Grifola frondosa	FooDB	31437929
Plant	Plant	Laurus nobilis	FooDB	31437929
Plant		Phytolacca americana	FooDB	31437929
Plant	Fruit	Actinidia chinensis	FooDB	31437929
Plant		Vitis labrusca	FooDB	31437929
Plant		Artemisia vulgaris	FooDB	31437929
Plant	Fruit	Citrus x paradisi	FooDB	31437929
Plant		Tetragonia tetragonioides	FooDB	31437929
Plant		Cucumis metuliferus	FooDB	31437929
Plant		Nephelium lappaceum	FooDB	31437929
Plant		Myrica	FooDB	31437929
Plant		Corylus avellana	FooDB	31437929
Plant		Castanea crenata	FooDB	31437929
Plant		Litchi chinensis	FooDB	31437929
Plant	Fruit	Rubus arcticus	FooDB	31437929
Plant		Quercus	FooDB	31437929
Plant		Trigonella foenum-graecum	FooDB	31437929
Plant		Vaccinium angustifolium	FooDB	31437929
Plant		Physalis	FooDB	31437929
Plant	Fruit	Prunus persica	FooDB	31437929
Plant	Nut	Carya illinoinensis	FooDB	31437929
Plant		Malpighia emarginata	FooDB	31437929
Plant	Fruit	Solanum melongena	FooDB	31437929
Plant		Brassica oleracea var. sabauda	FooDB	31437929
Plant	Fruit	Prunus persica	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Brassica napus	FooDB	31437929
Plant		Thelesperma	FooDB	31437929
Plant	Seed	Vigna angularis	FooDB	31437929
Plant		Levisticum officinale	FooDB	31437929
Plant		Asparagus officinalis	FooDB	31437929
Plant	Plant	Gossypium	FooDB	31437929
Plant	Fruit	Mangifera indica	FooDB	31437929
Plant		Citrus aurantiifolia	FooDB	31437929
Plant		Pimpinella anisum	FooDB	31437929
Plant		Chamerion angustifolium	FooDB	31437929
Plant		Artemisia dracunculus	FooDB	31437929
Plant		Eruca vesicaria ssp. sativa	FooDB	31437929
Plant	Fruit	Prunus domestica	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant		Vaccinium elliottii	FooDB	31437929
Plant		Matricaria recutita	FooDB	31437929
Plant		Ziziphus zizyphus	FooDB	31437929
Plant	Nut	Juglans regia	FooDB	31437929
Plant		Dimocarpus longan	FooDB	31437929
Plant		Salvia hispanica	FooDB	31437929
Plant		Pistacia vera	FooDB	31437929
Plant		Vitellaria paradoxa	FooDB	31437929
Plant	Fruit	Actinidia chinensis	FooDB	31437929
Plant		Pangium edule	FooDB	31437929
Plant		Ipomoea batatas	FooDB	31437929
Plant		Cynara cardunculus	FooDB	31437929
Plant		Allium	FooDB	31437929
Plant	Fruit	Actinidia chinensis	FooDB	31437929
Plant		Brassica oleracea var. viridis	FooDB	31437929
Plant	Fruit		FooDB	31437929
Plant	Plant	Prunus armeniaca	FooDB	31437929
Plant		Allium cepa var. cepa	FooDB	31437929
Plant	Fruit		FooDB	31437929
Plant		Agave	FooDB	31437929
Plant		Allium cepa var. cepa	FooDB	31437929
Plant		Diospyros	FooDB	31437929
Plant	Fruit		FooDB	31437929
Plant		Hedysarum alpinum	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Vigna aconitifolia	FooDB	31437929
Plant		Amaranthus	FooDB	31437929
Plant		Beta vulgaris	FooDB	31437929
Plant		Mammea americana	FooDB	31437929
Plant		Annona squamosa	FooDB	31437929
Plant		Cucumis sativus	FooDB	31437929
Plant		Brassica alboglabra	FooDB	31437929
Plant		Vitis	FooDB	31437929
Plant		Apium graveolens var. dulce	FooDB	31437929
Plant		Xanthosoma sagittifolium	FooDB	31437929
Plant	Fruit	Phoenix dactylifera	FooDB	31437929
Plant		Cynara scolymus	FooDB	31437929
Plant		Basella alba	FooDB	31437929
Plant		Carya illinoinensis	FooDB	31437929
Plant		Citrus latifolia	FooDB	31437929
Plant		Cynara scolymus	FooDB	31437929
Plant		Capsicum baccatum var. baccatum	FooDB	31437929
Plant	Seed	Vigna unguiculata	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant		Cinnamomum aromaticum	FooDB	31437929
Plant	Fruit	Prunus cerasus	FooDB	31437929
Plant		Byrsonima crassifolia	FooDB	31437929
Plant		Ribes rubrum	FooDB	31437929
Plant	Root	Daucus carota ssp. sativus	FooDB	31437929
Plant		Mentha arvensis	FooDB	31437929
Plant		Capsicum pubescens	FooDB	31437929
Plant	Fruit	Ribes rubrum	FooDB	31437929
Plant		Solanum lycopersicum var. cerasiforme	FooDB	31437929
Plant		Crateva religiosa	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Brassica rapa var. chinensis	FooDB	31437929
Plant			FooDB	31437929
Plant		Portulaca oleracea	FooDB	31437929
Plant		Ipomoea batatas	FooDB	31437929
Plant		Vitis aestivalis	FooDB	31437929
Plant		Eugenia javanica	FooDB	31437929
Plant		Pastinaca sativa	FooDB	31437929
Plant		Cucurbita maxima	FooDB	31437929
Plant		Chenopodium album	FooDB	31437929
Plant		Psophocarpus tetragonolobus	FooDB	31437929
Plant		Vaccinium stamineum	FooDB	31437929
Plant		Allium ampeloprasum	FooDB	31437929
Plant		Brassica oleracea	FooDB	31437929
Plant		Sechium edule	FooDB	31437929
Plant		Allium	FooDB	31437929
Plant		Lactuca sativa l. var. longifolia	FooDB	31437929
Plant	Fruit	Ribes rubrum	FooDB	31437929
Plant	Fruit	Vaccinium myrtillus	FooDB	31437929
Plant		Grataegosorbus mitschurinii	FooDB	31437929
Plant	Plant	Psidium cattleianum	FooDB	31437929
Plant		Diospyros virginiana	FooDB	31437929
Plant		Origanum x majoricum	FooDB	31437929
Plant		Rubus x loganobaccus	FooDB	31437929
Plant		Taraxacum officinale	FooDB	31437929
Plant		Tragopogon porrifolius	FooDB	31437929
Plant		Curcuma longa	FooDB	31437929
Plant		Ananas comosus	FooDB	31437929
Plant		Rumex	FooDB	31437929
Plant		Allium ascalonicum	FooDB	31437929
Plant		Persea americana	FooDB	31437929
Plant		Eugenia uniflora	FooDB	31437929
Plant		Citrullus lanatus var. fistulosus	FooDB	31437929
Plant		Amelanchier alnifolia	FooDB	31437929
Plant		Annona reticulata	FooDB	31437929
Plant		Cichorium intybus	FooDB	31437929
Plant		Sesbania bispinosa	FooDB	31437929
Plant		Brassica oleracea var. botrytis	FooDB	31437929
Plant		Cucumis melo	FooDB	31437929
Plant		Cinnamomum verum	FooDB	31437929
Plant	Fruit	Malpighia emarginata	FooDB	31437929
Plant	Tea	Camellia sinensis	FooDB	31437929
Plant		Ribes x nidigrolaria	FooDB	31437929
Plant		Garcinia mangostana	FooDB	31437929
Plant		Corchorus olitorius	FooDB	31437929
Plant		Juglans nigra	FooDB	31437929
Plant		Dioscorea pentaphylla	FooDB	31437929
Plant		Lathyrus sativus	FooDB	31437929
Plant		Allium tuberosum	FooDB	31437929
Plant	Fruit	Ficus carica	FooDB	31437929
Plant	Plant	Ribes nigrum	FooDB	31437929
Plant		Petasites japonicus	FooDB	31437929
Plant		Mentha x piperita	FooDB	31437929
Plant		Ocimum basilicum	FooDB	31437929
Plant		Gaylussacia baccata	FooDB	31437929
Plant	Fruit	Cucumis melo	FooDB	31437929
Plant		Prunus tomentosa	FooDB	31437929
Plant		Citrus limon	FooDB	31437929
Plant	Fruit	Cucumis melo	FooDB	31437929
Plant		Maranta arundinacea	FooDB	31437929
Plant	Fruit	Amelanchier alnifolia	FooDB	31437929
Plant		Matteuccia struthiopteris	FooDB	31437929
Plant		Tilia	FooDB	31437929
Plant		Cucurbita moschata	FooDB	31437929
Plant		Capsicum annuum var. annuum	FooDB	31437929
Plant		Cichorium intybus	FooDB	31437929
Plant		Sesamum orientale	FooDB	31437929
Plant	Fruit	Rubus chamaemorus	FooDB	31437929
Plant		Apium graveolens var. rapaceum	FooDB	31437929
Plant		Papaver	FooDB	31437929
Plant		Vaccinium myrtilloides	FooDB	31437929
Plant		Rosa	FooDB	31437929
Plant	Plant	Macadamia	FooDB	31437929
Plant	Fruit	Fragaria x ananassa	FooDB	31437929
Plant	Fruit	Prunus domestica	FooDB	31437929
Plant		Nelumbo	FooDB	31437929
Plant	Fruit	Fragaria x ananassa	FooDB	31437929
Plant	Fruit	Prunus domestica	FooDB	31437929
Plant		Brassica oleracea var. conica	FooDB	31437929
Plant		Annona cherimola	FooDB	31437929
Plant	Leaves	Elettaria cardamomum	FooDB	31437929
Plant		Eragrostis tef	FooDB	31437929
Plant		Citrus sinensis	FooDB	31437929
Plant	Fruit	Prunus domestica	FooDB	31437929
Plant		Brassica rapa var. pekinensis	FooDB	31437929
Plant		Brassica rapa	FooDB	31437929
Plant	Fruit	Prunus domestica	FooDB	31437929
Plant	Fruit	Capsicum annuum	FooDB	31437929
Plant		Lippia graveolens	FooDB	31437929
Plant		Prunus	FooDB	31437929
Plant	Fruit	Capsicum annuum	FooDB	31437929
Plant	Fruit	Capsicum annuum	FooDB	31437929
Plant		Capparis spinosa	FooDB	31437929
Plant		Phaseolus vulgaris	FooDB	31437929
Plant		Lens culinaris	FooDB	31437929
Plant		Solanum tuberosum	FooDB	31437929
Plant		Vaccinium deliciosum	FooDB	31437929
Plant		Citrullus lanatus	FooDB	31437929
Plant		Phaseolus lunatus	FooDB	31437929
Plant	Fruit	Citrus sinensis	FooDB	31437929
Plant		Artocarpus heterophyllus	FooDB	31437929
Plant		Prunus virginiana	FooDB	31437929
Plant		Musa acuminata	FooDB	31437929
Plant	Fruit	Rubus chamaemorus	FooDB	31437929
Plant		Carum carvi	FooDB	31437929
Plant		Vigna unguiculata ssp. unguiculata	FooDB	31437929
Plant		Citrus reticulata	FooDB	31437929
Plant		Macadamia tetraphylla	FooDB	31437929
Plant		Phyllostachys edulis	FooDB	31437929
Plant	Fruit	Vaccinium	FooDB	31437929
Plant		Lagenaria siceraria	FooDB	31437929
Plant		Allium schoenoprasum	FooDB	31437929
Plant	Fruit	Fragaria x ananassa	FooDB	31437929
Plant		Carissa macrocarpa	FooDB	31437929
Plant	Plant	Averrhoa carambola	FooDB	31437929
Plant		Anethum graveolens	FooDB	31437929
Plant		Satureja hortensis	FooDB	31437929
Plant		Brassica rapa var. rapa	FooDB	31437929
Plant	Fruit	Ribes x nidigrolaria	FooDB	31437929
Plant		Coriandrum sativum	FooDB	31437929
Plant		Sorbus aucuparia	FooDB	31437929
Plant		Nelumbo nucifera	FooDB	31437929
Plant		Cymbopogon citratus	FooDB	31437929
Plant		Bertholletia excelsa	FooDB	31437929
Plant	Juice	Citrus sinensis	FooDB	31437929
Plant		Brassica oleracea var. costata	FooDB	31437929
Plant		Panax	FooDB	31437929
Plant	Juice	Citrus sinensis	FooDB	31437929
Plant		Ceratonia siliqua	FooDB	31437929
Plant		Solanum lycopersicum var. lycopersicum	FooDB	31437929
Plant	Fruit	Vaccinium	FooDB	31437929
Plant	Bean	Phaseolus vulgaris	FooDB	31437929
Plant	Juice	Citrus sinensis	FooDB	31437929
Plant		Carthamus tinctorius	FooDB	31437929
Plant		Malus pumila	FooDB	31437929
Plant		Luffa aegyptiaca	FooDB	31437929
Plant		Anacardium occidentale	FooDB	31437929
Plant		Cicer arietinum	FooDB	31437929
Plant		Rubus occidentalis	FooDB	31437929
Plant		Vigna umbellata	FooDB	31437929
Plant	Plant	Eriobotrya japonica	FooDB	31437929
Plant		Allium fistulosum	FooDB	31437929
Plant		Capsicum	FooDB	31437929
Plant		Vaccinium alaskaense	FooDB	31437929
Plant	Fruit	Persea americana	FooDB	31437929
Plant		Lupinus	FooDB	31437929
Plant		Tilia cordata	FooDB	31437929
Plant	Fruit	Sambucus	FooDB	31437929
Plant	Fruit	Ananas comosus	FooDB	31437929
Plant		Prunus persica var. nucipersica	FooDB	31437929
Plant	Fruit	Ananas comosus	FooDB	31437929
Plant		Durio zibethinus	FooDB	31437929
Plant		Cichorium intybus	FooDB	31437929
Plant	Fruit	Vaccinium	FooDB	31437929
Plant	Juice	Prunus	FooDB	31437929
Plant		Brassica napus var. pabularia	FooDB	31437929
Plant	Fruit	Prunus	FooDB	31437929
Plant	Plant	Myristica fragrans	FooDB	31437929
Plant		Chenopodium quinoa	FooDB	31437929
Plant		Daucus carota ssp. sativus	FooDB	31437929
Plant	Pericarp	Vitis vinifera	FooDB	31437929
Plant	Fruit	Prunus	FooDB	31437929
Plant		Oenothera biennis	FooDB	31437929
Plant		Brassica rapa	FooDB	31437929
Plant	Fruit	Prunus	FooDB	31437929
Plant		Diospyros kaki	FooDB	31437929
Plant		Glycine max	FooDB	31437929
Plant		Ribes glandulosum	FooDB	31437929
Plant	Fruit	Prunus	FooDB	31437929
Plant		Brassica oleracea var. italica	FooDB	31437929
Plant		Virola surinamensis	FooDB	31437929
Plant		Verbena officinalis	FooDB	31437929
Plant		Rumex acetosa	FooDB	31437929
Plant		Vaccinium oxycoccos	FooDB	31437929
Plant		Syzygium aromaticum	FooDB	31437929
Plant	Fruit	Vaccinium	FooDB	31437929
Plant		Brassica oleracea var. capitata	FooDB	31437929
Plant	Nut	Macadamia	FooDB	31437929
Plant	Leaves	Prunus dulcis	FooDB	31437929
Plant		Pyrus pyrifolia	FooDB	31437929
Plant		Vicia faba	FooDB	31437929
Plant		Vaccinium parvifolium	FooDB	31437929
Plant		Aloysia triphylla	FooDB	31437929
Plant		Capsicum chinense	FooDB	31437929
Plant		Theobroma grandiflorum	FooDB	31437929
Plant		Vaccinium reticulatum	FooDB	31437929
Plant		Solanum quitoense	FooDB	31437929
Plant		Ginkgo biloba	FooDB	31437929
Plant		Capsicum annuum	FooDB	31437929
Plant		Vigna unguiculata ssp. cylindrica	FooDB	31437929
Plant		Flammulina velutipes	FooDB	31437929
Plant		Satureja montana	FooDB	31437929
Plant		Citrus japonica	FooDB	31437929
Plant			FooDB	31437929
Plant		Prunus avium	FooDB	31437929
Plant		Perideridia oregana	FooDB	31437929
Plant	Fruit	Ribes uva-crispa	FooDB	31437929
Plant		Piper nigrum	FooDB	31437929
Plant		Vaccinium arboreum	FooDB	31437929
Plant		Pouteria sapota	FooDB	31437929
Plant		Musa acuminata	FooDB	31437929
Plant		Wasabia japonica	FooDB	31437929
Plant		Origanum onites	FooDB	31437929
Plant		Origanum vulgare	FooDB	31437929
Plant		Viburnum edule	FooDB	31437929
Plant		Dioscorea	FooDB	31437929
Plant		Momordica charantia	FooDB	31437929
Plant		Brassica oleracea var. italica	FooDB	31437929
Plant	Fruit	Prunus avium	FooDB	31437929
Plant	Fruit	Rubus occidentalis	FooDB	31437929
Plant		Vaccinium uliginosum	FooDB	31437929
Plant		Castanea	FooDB	31437929
Plant		Rubus ursinus x idaeus	FooDB	31437929
Plant		Cirsium	FooDB	31437929
Plant		Lactuca sativa	FooDB	31437929
Plant		Pleurotus ostreatus	FooDB	31437929
Plant		Opuntia	FooDB	31437929
Plant		Anthriscus cerefolium	FooDB	31437929
Plant		Apium graveolens	FooDB	31437929
Plant		Raphanus sativus var. sativus	FooDB	31437929
Plant		Colocasia esculenta	FooDB	31437929
Plant		Prunus persica var. persica	FooDB	31437929
Plant	Plant	Theobroma cacao	FooDB	31437929
Plant		Nuphar lutea	FooDB	31437929
Plant	Fruit	Citrullus lanatus	FooDB	31437929
Plant		Lupinus albus	FooDB	31437929
Plant		Pachyrhizus erosus	FooDB	31437929
Plant		Cichorium endivia	FooDB	31437929
Plant	Juice	Rubus idaeus	FooDB	31437929
Plant		Cinnamomum	FooDB	31437929
Plant	Fruit	Rubus idaeus	FooDB	31437929
Plant		Elaeis	FooDB	31437929
Plant		Ribes uva-crispa	FooDB	31437929
Plant	Nut	Bertholletia excelsa	FooDB	31437929
Plant		Feijoa sellowiana	FooDB	31437929
Plant		Dysphania ambrosioides	FooDB	31437929
Plant	Fruit	Anacardium occidentale	FooDB	31437929
Plant		Raphanus sativus var. niger	FooDB	31437929
Plant		Photinia melanocarpa	FooDB	31437929
Plant		Salvia officinalis	FooDB	31437929
Plant		Rheum rhabarbarum	FooDB	31437929
Plant		Vaccinium	FooDB	31437929
Plant	Fruit	Prunus persica var. nucipersica	FooDB	31437929
Plant		Lablab purpureus	FooDB	31437929
Plant	Fruit	Prunus persica var. nucipersica	FooDB	31437929
Plant		Cydonia oblonga	FooDB	31437929
Plant		Citrus maxima	FooDB	31437929
Plant		Syzygium jambos	FooDB	31437929
Plant		Annona muricata	FooDB	31437929
Plant		Salix pulchra	FooDB	31437929
Plant		Castanea sativa	FooDB	31437929
Plant		Cucurbita	FooDB	31437929
Plant		Fagus	FooDB	31437929
Plant		Tamarindus indica	FooDB	31437929
Plant		Opuntia cochenillifera	FooDB	31437929
Plant	Nut	Anacardium occidentale	FooDB	31437929
Plant		Vaccinium ovatum	FooDB	31437929
Plant		Cocos nucifera	FooDB	31437929
Plant		Phaseolus coccineus	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Thymus pulegioides	FooDB	31437929
Plant	Plant	Coffea arabica	FooDB	31437929
Plant		Mespilus germanica	FooDB	31437929
Plant	Fruit	Vaccinium vitis-idaea	FooDB	31437929
Plant		Solanum tuberosum	FooDB	31437929
Plant		Cucurbita pepo var. cylindrica	FooDB	31437929
Plant		Brassica rapa var. perviridis	FooDB	31437929
Plant		Psidium guajava	FooDB	31437929
Plant		Mentha aquatica	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Salvia elegans	FooDB	31437929
Plant		Mentha	FooDB	31437929
Plant		Olea europaea	FooDB	31437929
Plant	Fruit	Photinia melanocarpa	FooDB	31437929
Plant		Sagittaria latifolia	FooDB	31437929
Plant	Fruit	Solanum lycopersicum	FooDB	31437929
Plant		Sambucus	FooDB	31437929
Plant		Pinus	FooDB	31437929
Plant	Flower	Crocus sativus	FooDB	31437929
Plant	Fruit	Vaccinium vitis-idaea	FooDB	31437929
Plant	Fruit	Vitis	FooDB	31437929
Plant		Daucus carota	FooDB	31437929
Plant		Syzygium cumini	FooDB	31437929
Plant	Fruit	Vitis vinifera	FooDB	31437929
Plant	Fruit	Vaccinium myrtillus	FooDB	31437929
Plant		Tilia tomentosa	FooDB	31437929
Plant		Typha angustifolia	FooDB	31437929
Plant		Vaccinium vitis-idaea	FooDB	31437929
Plant	Juice	Photinia melanocarpa	FooDB	31437929
Plant		Empetrum nigrum	FooDB	31437929
Plant		Valerianella locusta	FooDB	31437929
Plant		Myrica rubra	FooDB	31437929
Plant	Juice	Photinia melanocarpa	FooDB	31437929
Plant	Fruit	Vaccinium corymbosum	FooDB	31437929
Plant	Juice	Photinia melanocarpa	FooDB	31437929
Plant		Vaccinium angustifolium x vaccinium corymbosum	FooDB	31437929
Plant		Sisymbrium	FooDB	31437929
Plant		Brassica oleracea l. var. capitata l. f. alba dc.	FooDB	31437929
Plant		Vanilla	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Raphanus sativus	FooDB	31437929
Plant		Vigna radiata	FooDB	31437929
Plant		Carya	FooDB	31437929
Plant		Hyssopus officinalis	FooDB	31437929
Plant		Manihot esculenta	FooDB	31437929
Plant		Physalis philadelphica var. immaculata	FooDB	31437929
Plant	Fruit	Fragaria x ananassa	FooDB	31437929
Plant		Beta vulgaris ssp. cicla	FooDB	31437929
Plant		Scorzonera hispanica	FooDB	31437929
Plant		Vigna unguiculata ssp. sesquipedalis	FooDB	31437929
Plant		Angelica keiskei	FooDB	31437929
Plant		Ipomoea aquatica	FooDB	31437929
Plant	Leaves	Malus pumila	FooDB	31437929
Plant		Cuminum cyminum	FooDB	31437929
Plant		Brassica oleracea	FooDB	31437929
Plant		Rubus spectabilis	FooDB	31437929
Plant		Allium sativum	FooDB	31437929
Plant		Arachis hypogaea	FooDB	31437929
Plant		Cantharellus cibarius	FooDB	31437929
Plant	Fruit	Malus pumila	FooDB	31437929
Plant		Pyrus communis	FooDB	31437929
Plant		Sinapis alba	FooDB	31437929
Plant		Solanum tuberosum	FooDB	31437929
Plant		Solanum lycopersicum	FooDB	31437929
Plant		Solanum tuberosum	FooDB	31437929
Plant	Fruit	Vitis	FooDB	31437929
Plant		Apium graveolens var. secalinum	FooDB	31437929
Plant		Brassica ruvo	FooDB	31437929
Plant	Inflorescence	Musa x paradisiaca	FooDB	31437929
Plant	Seed	Phaseolus vulgaris	FooDB	31437929
Plant		Syzygium cumini	FooDB	31437929
Plant	Juice	Vitis	FooDB	31437929
Plant		Abelmoschus esculentus	FooDB	31437929
Plant		Morus nigra	FooDB	31437929
Plant		Mentha spicata	FooDB	31437929
Plant		Moringa oleifera	FooDB	31437929
Plant	Tea		FooDB	31437929

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Blood	Detected and Quantified	0.02		0.03 +/	0.01	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	17709440
Human Urine	Detected and Quantified	1.04	0.26			umol/mmol creatinine	Adult (>18 years old)	Not Specified	Normal	HMDB	17709440
Human Fibroblasts	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Kidney	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

HMDB0002708

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Not Available

Wikipedia Link

Cyanidin

METLIN ID

Not Available

PubChem Compound

128861

PDB ID

Not Available

ChEBI ID

27843

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Miyazawa T, Nakagawa K, Kudo M, Muraishi K, Someya K: Direct intestinal absorption of red fruit anthocyanins, cyanidin-3-glucoside and cyanidin-3,5-diglucoside, into rats and humans. J Agric Food Chem. 1999 Mar;47(3):1083-91. doi: 10.1021/jf9809582. [PubMed:10552420 ]
Wu X, Cao G, Prior RL: Absorption and metabolism of anthocyanins in elderly women after consumption of elderberry or blueberry. J Nutr. 2002 Jul;132(7):1865-71. doi: 10.1093/jn/132.7.1865. [PubMed:12097661 ]
Galvano F, La Fauci L, Lazzarino G, Fogliano V, Ritieni A, Ciappellano S, Battistini NC, Tavazzi B, Galvano G: Cyanidins: metabolism and biological properties. J Nutr Biochem. 2004 Jan;15(1):2-11. doi: 10.1016/j.jnutbio.2003.07.004. [PubMed:14711454 ]
Lazze MC, Savio M, Pizzala R, Cazzalini O, Perucca P, Scovassi AI, Stivala LA, Bianchi L: Anthocyanins induce cell cycle perturbations and apoptosis in different human cell lines. Carcinogenesis. 2004 Aug;25(8):1427-33. doi: 10.1093/carcin/bgh138. Epub 2004 Mar 11. [PubMed:15016660 ]
Russo A, La Fauci L, Acquaviva R, Campisi A, Raciti G, Scifo C, Renis M, Galvano G, Vanella A, Galvano F: Ochratoxin A-induced DNA damage in human fibroblast: protective effect of cyanidin 3-O-beta-d-glucoside. J Nutr Biochem. 2005 Jan;16(1):31-7. doi: 10.1016/j.jnutbio.2004.05.005. [PubMed:15629238 ]
Talavera S, Felgines C, Texier O, Besson C, Gil-Izquierdo A, Lamaison JL, Remesy C: Anthocyanin metabolism in rats and their distribution to digestive area, kidney, and brain. J Agric Food Chem. 2005 May 18;53(10):3902-8. doi: 10.1021/jf050145v. [PubMed:15884815 ]
Stoner GD, Sardo C, Apseloff G, Mullet D, Wargo W, Pound V, Singh A, Sanders J, Aziz R, Casto B, Sun X: Pharmacokinetics of anthocyanins and ellagic acid in healthy volunteers fed freeze-dried black raspberries daily for 7 days. J Clin Pharmacol. 2005 Oct;45(10):1153-64. doi: 10.1177/0091270005279636. [PubMed:16172180 ]
He J, Magnuson BA, Lala G, Tian Q, Schwartz SJ, Giusti MM: Intact anthocyanins and metabolites in rat urine and plasma after 3 months of anthocyanin supplementation. Nutr Cancer. 2006;54(1):3-12. doi: 10.1207/s15327914nc5401_2. [PubMed:16800768 ]
Djoumbou-Feunang Y, Fiamoncini J, Gil-de-la-Fuente A, Greiner R, Manach C, Wishart DS: BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification. J Cheminform. 2019 Jan 5;11(1):2. doi: 10.1186/s13321-018-0324-5. [PubMed:30612223 ]
Djoumbou Feunang, Yannick (2017). Cheminformatics Tools for Enabling Metabolomics, 2017 (PhD thesis). University of Alberta.

Showing metabocard for Cyanidin (MMDBc0033612)

MOL for #<Metabolite:0x00007fecf46b91d8>

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PDB for #<Metabolite:0x00007fecf46b91d8>

3D PDB for #<Metabolite:0x00007fecf46b91d8>

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Structure for #<Metabolite:0x00007fecf46b91d8>

3D Structure for #<Metabolite:0x00007fecf46b91d8>