MiMeDB: Showing metabocard for PC(P-16:0/20:3(5Z,8Z,11Z)) (MMDBc0034144)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 05:17:55 UTC

Update Date

2024-04-30 20:21:56 UTC

Metabolite ID

MMDBc0034144

Metabolite Identification

Common Name

PC(P-16:0/20:3(5Z,8Z,11Z))

Description

PC(P-16:0/20:3(5Z,8Z,11Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(P-16:0/20:3(5Z,8Z,11Z)), in particular, consists of one chain of plasmalogen 16:0 at the C-1 position and one chain of mead acid at the C-2 position. The plasmalogen 16:0 moiety is derived from animal fats, liver and kidney, while the mead acid moiety is derived from fish oils, liver and kidney. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC. Plasmalogens are glycerol ether phospholipids. They are of two types, alkyl ether (-O-CH2-) and alkenyl ether (-O-CH=CH-). Dihydroxyacetone phosphate (DHAP) serves as the glycerol precursor for the synthesis of plasmalogens. Three major classes of plasmalogens have been identified: choline, ethanolamine and serine derivatives. Ethanolamine plasmalogen is prevalent in myelin. Choline plasmalogen is abundant in cardiac tissue. Usually, the highest proportion of the plasmalogen form is in the ethanolamine class with rather less in choline, and commonly little or none in other phospholipids such as phosphatidylinositol. In choline plasmalogens of most tissues, a higher proportion is often of the O-alkyl rather than the O-alkenyl form, but the reverse tends to be true in heart lipids. In animal tissues, the alkyl and alkenyl moieties in both non-polar and phospholipids tend to be rather simple in composition with 16:0, 18:0 and 18:1 (double bond in position 9) predominating. Ether analogues of triacylglycerols, i.e. 1-alkyldiacyl-sn-glycerols, are present at trace levels only if at all in most animal tissues, but they can be major components of some marine lipids.

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02251207462D          

 53 52  0  0  0  0            999 V2000
    9.9411   -9.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2689   -8.6260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7772   -7.9636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1050   -7.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6133   -6.5441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9411   -5.7870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494   -5.1245    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7772   -4.3675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2855   -3.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6133   -2.9480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1216   -2.2855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494   -1.5284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9576   -0.8660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2855   -0.1089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7937    0.5535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1216    1.3106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6298    1.9730    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9576    2.7301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4659    3.3925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6464    3.2979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1546    3.9603    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3351    3.8657    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    6.4297    3.0461    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.2404    4.6852    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5155    3.7711    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0238    4.4335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2042    4.3389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    5.0013    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.3749    5.4930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0501    4.5096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2208    5.6637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7937    4.1496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3020    4.8120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4825    4.7174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6298    5.5691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494    5.6637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9411    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7607    5.0959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2524    4.4335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0720    4.5281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3998    5.2852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2193    5.3798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5472    6.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0554    6.7993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3832    7.5564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8915    8.2189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2193    8.9759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0389    9.0706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3667    9.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1863    9.9223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5141   10.6793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3336   10.7740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6615   11.5310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
 19 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  4  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  4  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 44 43  1  4  0  0  0
 44 45  2  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
M  CHG  2  23  -1  28   1
M  END


  Mrv0541 02251207462D          

 53 52  0  0  0  0            999 V2000
    9.9411   -9.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2689   -8.6260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7772   -7.9636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1050   -7.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6133   -6.5441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9411   -5.7870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494   -5.1245    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7772   -4.3675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2855   -3.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6133   -2.9480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1216   -2.2855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494   -1.5284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9576   -0.8660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2855   -0.1089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7937    0.5535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1216    1.3106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6298    1.9730    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9576    2.7301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4659    3.3925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6464    3.2979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1546    3.9603    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3351    3.8657    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    6.4297    3.0461    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.2404    4.6852    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5155    3.7711    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0238    4.4335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2042    4.3389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    5.0013    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.3749    5.4930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0501    4.5096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2208    5.6637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7937    4.1496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3020    4.8120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4825    4.7174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6298    5.5691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4494    5.6637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9411    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7607    5.0959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2524    4.4335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0720    4.5281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3998    5.2852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2193    5.3798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5472    6.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0554    6.7993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3832    7.5564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8915    8.2189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2193    8.9759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0389    9.0706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3667    9.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1863    9.9223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5141   10.6793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3336   10.7740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6615   11.5310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
 19 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  4  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  4  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 44 43  1  4  0  0  0
 44 45  2  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
M  CHG  2  23  -1  28   1
M  END
> <DATABASE_ID>
MMDBc0034144

> <DATABASE_NAME>
MIME

> <SMILES>
CCCCCCCCCCCCCCC=COCC(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCC=CCC=CCC=CCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C44H82NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-25-27-29-31-33-35-37-44(46)52-43(42-51-53(47,48)50-40-38-45(3,4)5)41-49-39-36-34-32-30-28-26-21-19-17-15-13-11-9-7-2/h20,22,24-25,29,31,36,39,43H,6-19,21,23,26-28,30,32-35,37-38,40-42H2,1-5H3

> <INCHI_KEY>
XWYIIYJIVUGRQE-UHFFFAOYSA-N

> <FORMULA>
C44H82NO7P

> <MOLECULAR_WEIGHT>
768.0981

> <EXACT_MASS>
767.582890495

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
96.03514855259625

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[3-(hexadec-1-en-1-yloxy)-2-(icosa-5,8,11-trienoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
6.18

> <JCHEM_LOGP>
9.199080710194918

> <ALOGPS_LOGS>
-7.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550574852833202

> <JCHEM_PKA_STRONGEST_BASIC>
-4.731743638601754

> <JCHEM_POLAR_SURFACE_AREA>
94.12

> <JCHEM_REFRACTIVITY>
237.9574

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.05e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[3-(hexadec-1-en-1-yloxy)-2-(icosa-5,8,11-trienoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0      18.557 -17.515   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      19.169 -16.102   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      18.251 -14.865   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      18.863 -13.452   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      17.945 -12.216   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      18.557 -10.802   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      17.639  -9.566   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.251  -8.153   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      17.333  -6.916   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      17.945  -5.503   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      17.027  -4.266   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      17.639  -2.853   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.721  -1.617   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.333  -0.203   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      16.415   1.033   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.027   2.446   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      16.109   3.683   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      16.721   5.096   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      15.803   6.333   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      14.273   6.156   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      13.355   7.393   0.000  0.00  0.00           O+0
HETATM   22  P   UNK     0      11.826   7.216   0.000  0.00  0.00           P+0
HETATM   23  O   UNK     0      12.002   5.686   0.000  0.00  0.00           O-1
HETATM   24  O   UNK     0      11.649   8.746   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      10.296   7.039   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       9.378   8.276   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.848   8.099   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       6.930   9.336   0.000  0.00  0.00           N+1
HETATM   29  C   UNK     0       8.166  10.254   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.694   8.418   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.012  10.572   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      16.415   7.746   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      15.497   8.982   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      13.967   8.806   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      16.109  10.396   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      17.639  10.572   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      18.557   9.336   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      20.087   9.512   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      21.004   8.276   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      22.534   8.452   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      23.146   9.866   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      24.676  10.042   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      25.288  11.456   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      24.370  12.692   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      24.982  14.105   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      24.064  15.342   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      24.676  16.755   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      26.206  16.932   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      26.818  18.345   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      28.348  18.522   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      28.960  19.935   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      30.489  20.111   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      31.101  21.525   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   32                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24   25                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30   31                                             
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   28                                                            
CONECT   32   19   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  104    0
END

Synonyms

Not Available

Molecular Formula

C₄₄H₈₂NO₇P

Average Mass

768.0981

Monoisotopic Mass

767.582890495

IUPAC Name

(2-{[3-(hexadec-1-en-1-yloxy)-2-(icosa-5,8,11-trienoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[3-(hexadec-1-en-1-yloxy)-2-(icosa-5,8,11-trienoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCC=COCC(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCC=CCC=CCC=CCCCCCCCC

InChI Identifier

InChI=1S/C44H82NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-25-27-29-31-33-35-37-44(46)52-43(42-51-53(47,48)50-40-38-45(3,4)5)41-49-39-36-34-32-30-28-26-21-19-17-15-13-11-9-7-2/h20,22,24-25,29,31,36,39,43H,6-19,21,23,26-28,30,32-35,37-38,40-42H2,1-5H3

InChI Key

XWYIIYJIVUGRQE-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

1-(1Z-alkenyl),2-acyl-glycerophosphocholines

Alternative Parents

Substituents

1-(1z-alkenyl),2-acyl-glycerophosphocholine
Phosphocholine
Glycerol vinyl ether
Fatty acid ester
Dialkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Quaternary ammonium salt
Tetraalkylammonium salt
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Amine
Organic oxide
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Hydrocarbon derivative
Organic salt
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	3.0e-05 g/L	ALOGPS
logP	6.18	ALOGPS
logP	9.2	ChemAxon
logS	-7.4	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	94.12 Å²	ChemAxon
Rotatable Bond Count	40	ChemAxon
Refractivity	237.96 m³·mol⁻¹	ChemAxon
Polarizability	96.04 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	2022-08-23	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

All Tissues
Blood
Feces
Saliva
Urine

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference
Animal	Milk	Bos taurus	FooDB	Manually Annotated
Animal	Milk	Bos taurus	FooDB	Manually Annotated

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Blood	Detected and Quantified	188.801	66.714			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	24704061
Human Urine	Detected and Quantified	0.0024		0.0005	0.024	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Feces	Detected and Quantified	1.07	1.25			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Feces	Detected and Quantified	1.67	5.26			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Blood	Detected and Quantified	106		89.5	120	uM	Infant (0-1 year old)		Normal	HMDB	25754623
Human Blood	Detected and Quantified	129.9	26.4			uM	Adult (>18 years old)	Both	Normal	HMDB	28278231
Human Blood	Detected and Quantified	165.5	44.39			uM	Adult (>18 years old)	Both	Normal	HMDB	26010610
Human Blood	Detected and Quantified	63.7		53.6	73.5	uM	Newborn (0-30 days old)		Normal	HMDB	25754623
Human Blood	Detected and Quantified	108.5	32.8			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Blood	Detected and Quantified	132.1	39.6			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Saliva	Detected and Quantified	0.082	0.033			uM	Adult (>18 years old)	Both	Normal	HMDB	https://doi.org/10.1007/s11306-015-0840-5
Human All tissues	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB027973

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

76043080

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. doi: 10.1016/0092-8674(95)90409-3. [PubMed:7834746 ]
Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. doi: 10.1038/35036052. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. doi: 10.1194/jlr.R600022-JLR200. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. doi: 10.1194/jlr.R700005-JLR200. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.

Showing metabocard for PC(P-16:0/20:3(5Z,8Z,11Z)) (MMDBc0034144)

MOL for #<Metabolite:0x00007fdb509cca38>

3D MOL for #<Metabolite:0x00007fdb509cca38>

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Structure for #<Metabolite:0x00007fdb509cca38>

3D Structure for #<Metabolite:0x00007fdb509cca38>