MiMeDB: Showing metabocard for (R)-mevalonate (MMDBc0054096)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-05 22:52:41 UTC

Update Date

2022-09-01 02:27:12 UTC

Metabolite ID

MMDBc0054096

Metabolite Identification

Common Name

(R)-mevalonate

Description

(R)-mevalonate belongs to the class of organic compounds known as hydroxy fatty acids. These are fatty acids in which the chain bears a hydroxyl group (R)-mevalonate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(R)-Mevalonic acid	Generator
Mevalonate	MeSH
Acid, mevalonic	MeSH
Mevalonic acid	MeSH

Molecular Formula

C₆H₁₁O₄

Average Mass

147.1491

Monoisotopic Mass

147.06573384

IUPAC Name

(3R)-3,5-dihydroxy-3-methylpentanoate

Traditional Name

(R)-mevalonate

CAS Registry Number

Not Available

SMILES

C[C@@](O)(CCO)CC([O-])=O

InChI Identifier

InChI=1S/C6H12O4/c1-6(10,2-3-7)4-5(8)9/h7,10H,2-4H2,1H3,(H,8,9)/p-1/t6-/m1/s1

InChI Key

KJTLQQUUPVSXIM-ZCFIWIBFSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxy fatty acids. These are fatty acids in which the chain bears a hydroxyl group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Hydroxy fatty acids

Alternative Parents

Substituents

Branched fatty acid
Hydroxy fatty acid
Short-chain hydroxy acid
Methyl-branched fatty acid
Tertiary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organooxygen compound
Organic oxygen compound
Organic oxide
Alcohol
Carbonyl group
Primary alcohol
Hydrocarbon derivative
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

mevalonate (CHEBI:36464 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	498 g/L	ALOGPS
logP	-0.62	ALOGPS
logP	-1.1	ChemAxon
logS	0.48	ALOGPS
pKa (Strongest Acidic)	4.38	ChemAxon
pKa (Strongest Basic)	-2.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	80.59 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	45.35 m³·mol⁻¹	ChemAxon
Polarizability	14.14 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-00lr-2900000000-c74e5f184665a8f40ce4	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-01c9-7900000000-9984662c7bff89d3005a	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-00di-9200000000-df08aa66892d818b72e7	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0019-9800000000-3cd3da1680afa2bd0cee	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0081-9500000000-3d2dcb732679af581c45	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0079-9100000000-f9d8e0aeed0e9429aa88	2016-09-12	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013363	(R)-mevalonate	(3S)-hydroxy-3-methylglutaryl-CoA	Probable 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Reduction	RHEA	34755880
MMDBr0013481	(R)-mevalonate	(3S)-hydroxy-3-methylglutaryl-CoA	3-hydroxy-3-methylglutaryl-coenzyme A reductase	Reduction	RHEA	34755880
MMDBr0013482	(R)-mevalonate	(3S)-hydroxy-3-methylglutaryl-CoA	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	Reduction	RHEA	34755880
MMDBr0013483	(3S)-hydroxy-3-methylglutaryl-CoA	(R)-mevalonate	3-hydroxy-3-methylglutaryl-coenzyme A reductase	Reduction	RHEA	34755880
MMDBr0013613	(R)-mevalonate	Mevalonic acid-5P	Mevalonate kinase erg12	Phosphorylation	RHEA	34755880
MMDBr0013614	(R)-mevalonate	Mevalonic acid-5P	Mevalonate kinase erg12	Phosphorylation	RHEA	34755880
MMDBr0015876	(R)-mevalonate	(R)-3-phosphomevalonate	Mevalonate-3-kinase	Phosphorylation	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria	Spirochaetes	1	Human
Bacteria	Proteobacteria	1
Archaea/Archaea	Crenarchaeota	1
Archaea/Archaea	Euryarchaeota	14
Eukaryota/Fungi	Ascomycota	13	Human feces
Eukaryota/Fungi	Basidiomycota	1
Eukaryota/Fungi	Mucoromycota	1
Archaea	Crenarchaeota	1

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB030148

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5288798

PDB ID

Not Available

ChEBI ID

36464

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for (R)-mevalonate (MMDBc0054096)

MOL for #<Metabolite:0x00007fa4a95fdb88>

3D MOL for #<Metabolite:0x00007fa4a95fdb88>

3D SDF for #<Metabolite:0x00007fa4a95fdb88>

3D-SDF for #<Metabolite:0x00007fa4a95fdb88>

PDB for #<Metabolite:0x00007fa4a95fdb88>

3D PDB for #<Metabolite:0x00007fa4a95fdb88>

SMILES for #<Metabolite:0x00007fa4a95fdb88>

INCHI for #<Metabolite:0x00007fa4a95fdb88>

Structure for #<Metabolite:0x00007fa4a95fdb88>

3D Structure for #<Metabolite:0x00007fa4a95fdb88>