MiMeDB: Showing metabocard for aldehydo-D-ribose 5-phosphate (MMDBc0054326)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-05 23:07:07 UTC

Update Date

2024-10-13 10:58:57 UTC

Metabolite ID

MMDBc0054326

Metabolite Identification

Common Name

aldehydo-D-ribose 5-phosphate

Description

Ribose-5-phosphate belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. The acyclic form of D-ribose 5-phosphate. Ribose-5-phosphate is an extremely weak basic (essentially neutral) compound (based on its pKa). In humans, ribose-5-phosphate is involved in pentose phosphate pathway.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
5-O-Phosphono-D-ribose	ChEBI
D-Ribose 5-phosphate	ChEBI
Ribose 5-phosphate	ChEBI
D-Ribose 5-phosphoric acid	Generator
Ribose 5-phosphoric acid	Generator
Ribose-5-phosphoric acid	Generator
Ribose-5-phosphoric acid, monobarium salt, (D-ribose)-isomer	MeSH
Ribose-5-phosphoric acid, (D-ribose)-isomer	MeSH
Ribose-5-phosphoric acid, (D-ribofuranose)-isomer	MeSH
D-Ribose-5-phosphoric acid	MeSH
Ribose phosphate	MeSH
Ribose 5-monophosphate	MeSH
Ribose-5-phosphoric acid, monosodium salt, (D-ribose)-isomer	MeSH
aldehydo-D-Ribose 5-phosphoric acid	Generator
Ribose-5-phosphate	MeSH

Molecular Formula

C₅H₁₁O₈P

Average Mass

230.1098

Monoisotopic Mass

230.01915384

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1

InChI Key

PPQRONHOSHZGFQ-LMVFSUKVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Beta-hydroxy aldehyde
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Alpha-hydroxyaldehyde
Secondary alcohol
Polyol
Hydrocarbon derivative
Aldehyde
Organic oxide
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

D-ribose 5-phosphate (CHEBI:17797 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria	Firmicutes	136	Human feces; Human ; Cattle ; Catfish
Bacteria	Aquificae	1
Bacteria	Proteobacteria	285	Human ; Chicken ; Human feces; Pig ; Cattle ; River trout ; Turkey ; Sheep
Bacteria	Actinobacteria	56	Cattle ; Human ; Human feces
Bacteria	Tenericutes	2	Human
Bacteria	Cyanobacteria	25
Eukaryota/Fungi	Ascomycota	19	Human feces; Human saliva; Human supragingival plaque
Bacteria	Spirochaetes	7	Human
Archaea/Archaea	Euryarchaeota	36
Archaea/Archaea	Crenarchaeota	20
Bacteria	Chloroflexi	10
Bacteria	Chlamydiae	10	Human ; Sheep ; Cat
Eukaryota/Fungi	Basidiomycota	11	Human feces
Bacteria	Deinococcus-thermus	4
Archaea/Archaea	Korarchaeota	1
Bacteria	nah	1
Bacteria	Dictyoglomi	2
Bacteria	Fusobacteria	1	Human ; Human feces
Archaea	Euryarchaeota	3
Archaea	Crenarchaeota	1
Bacteria	Thermotogae	9
Bacteria	Bacteroidetes	1
Archaea/Archaea	Thaumarchaeota	2
Bacteria	Acidobacteria	2

Exposure Sources

Source Type	Activity	Data Source	Reference
Drugs	Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	Not Available	U.S. Environmental Protection Agency	CompTox
Domestics	Not Available	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

DB02053

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

RIBOSE-5P

BiGG ID

Not Available

Wikipedia Link

D-ribose_5-phosphate

METLIN ID

Not Available

PubChem Compound

77982

PDB ID

Not Available

ChEBI ID

17797

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for aldehydo-D-ribose 5-phosphate (MMDBc0054326)

MOL for #<Metabolite:0x0000556b6ab7c5e8>

3D MOL for #<Metabolite:0x0000556b6ab7c5e8>

3D SDF for #<Metabolite:0x0000556b6ab7c5e8>

3D-SDF for #<Metabolite:0x0000556b6ab7c5e8>

PDB for #<Metabolite:0x0000556b6ab7c5e8>

3D PDB for #<Metabolite:0x0000556b6ab7c5e8>

SMILES for #<Metabolite:0x0000556b6ab7c5e8>

INCHI for #<Metabolite:0x0000556b6ab7c5e8>

Structure for #<Metabolite:0x0000556b6ab7c5e8>

3D Structure for #<Metabolite:0x0000556b6ab7c5e8>