MiMeDB: Showing metabocard for (15S)-hydroperoxy-(11Z,13E)-eicosadienoic acid (MMDBc0054761)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:34:00 UTC

Update Date

2022-08-12 20:09:04 UTC

Metabolite ID

MMDBc0054761

Metabolite Identification

Common Name

(15S)-hydroperoxy-(11Z,13E)-eicosadienoic acid

Description

Based on a literature review very few articles have been published on CHEBI:144832.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221342D          

 29 28  0  0  1  0            999 V2000
    2.0921   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066   -0.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355   -0.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    1.6204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    0.3829    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.0329    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.3789    0.3829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    0.7954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    3.2704    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    1.6204    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    0.3829    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355   -0.0296    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  5  4  1  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  2  0  0  0  0
 12 10  1  0  0  0  0
 13  3  1  0  0  0  0
 14 11  1  0  0  0  0
 15 12  1  0  0  0  0
 16 13  1  0  0  0  0
 17 14  2  0  0  0  0
 18 15  1  0  0  0  0
 19 16  1  0  0  0  0
 19 17  1  0  0  0  0
 20 18  1  0  0  0  0
 21 20  2  0  0  0  0
 22 20  1  0  0  0  0
 19 24  1  6  0  0  0
 24 23  1  0  0  0  0
 25  9  1  0  0  0  0
 26 11  1  0  0  0  0
 27 14  1  0  0  0  0
 28 17  1  0  0  0  0
 19 29  1  6  0  0  0
M  CHG  1  22  -1
M  END


  Mrv1652306172221342D          

 29 28  0  0  1  0            999 V2000
    2.0921   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066   -0.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355   -0.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    1.6204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500   -0.4421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    0.3829    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.0329    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.3789    0.3829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    0.7954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    3.2704    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    1.6204    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    0.3829    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355   -0.0296    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  5  4  1  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  2  0  0  0  0
 12 10  1  0  0  0  0
 13  3  1  0  0  0  0
 14 11  1  0  0  0  0
 15 12  1  0  0  0  0
 16 13  1  0  0  0  0
 17 14  2  0  0  0  0
 18 15  1  0  0  0  0
 19 16  1  0  0  0  0
 19 17  1  0  0  0  0
 20 18  1  0  0  0  0
 21 20  2  0  0  0  0
 22 20  1  0  0  0  0
 19 24  1  6  0  0  0
 24 23  1  0  0  0  0
 25  9  1  0  0  0  0
 26 11  1  0  0  0  0
 27 14  1  0  0  0  0
 28 17  1  0  0  0  0
 19 29  1  6  0  0  0
M  CHG  1  22  -1
M  END
> <DATABASE_ID>
MMDBc0054761

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C(CCCCCCCCCC([O-])=O)=C(/[H])\C(\[H])=C(/[H])[C@]([H])(CCCCC)OO

> <INCHI_IDENTIFIER>
InChI=1S/C20H36O4/c1-2-3-13-16-19(24-23)17-14-11-9-7-5-4-6-8-10-12-15-18-20(21)22/h9,11,14,17,19,23H,2-8,10,12-13,15-16,18H2,1H3,(H,21,22)/p-1/b11-9-,17-14+/t19-/m0/s1

> <INCHI_KEY>
KEXNVBSLXJLOPR-XMSPSUPSSA-M

> <FORMULA>
C20H35O4

> <MOLECULAR_WEIGHT>
339.497

> <EXACT_MASS>
339.254083187

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
40.92437732032011

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(11Z,13E,15S)-15-hydroperoxyicosa-11,13-dienoate

> <JCHEM_LOGP>
6.529538434666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.712374083006361

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.952019579857379

> <JCHEM_PKA_STRONGEST_BASIC>
-4.2368076090774425

> <JCHEM_POLAR_SURFACE_AREA>
69.59

> <JCHEM_REFRACTIVITY>
111.4236

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(11Z,13E,15S)-15-hydroperoxyicosa-11,13-dienoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       3.905  -0.825   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.239  -1.595   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.573  -0.825   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.573   5.335   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.573   3.795   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.906  -1.595   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.906   3.025   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.240  -0.825   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.906   1.485   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.240   0.715   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      21.243   6.105   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      19.909   3.795   0.000  0.00  0.00           O-1
HETATM   23  O   UNK     0      11.907   0.715   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      10.574   1.485   0.000  0.00  0.00           O+0
HETATM   25  H   UNK     0       5.239   6.105   0.000  0.00  0.00           H+0
HETATM   26  H   UNK     0       5.239   3.025   0.000  0.00  0.00           H+0
HETATM   27  H   UNK     0       9.240   3.795   0.000  0.00  0.00           H+0
HETATM   28  H   UNK     0       6.573   0.715   0.000  0.00  0.00           H+0
HETATM   29  H   UNK     0       7.906  -0.055   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2   13                                                       
CONECT    4    5    6                                                       
CONECT    5    4    7                                                       
CONECT    6    4    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   11   25                                                  
CONECT   10    8   12                                                       
CONECT   11    9   14   26                                                  
CONECT   12   10   15                                                       
CONECT   13    3   16                                                       
CONECT   14   11   17   27                                                  
CONECT   15   12   18                                                       
CONECT   16   13   19                                                       
CONECT   17   14   19   28                                                  
CONECT   18   15   20                                                       
CONECT   19   16   17   24   29                                             
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   24                                                            
CONECT   24   19   23                                                       
CONECT   25    9                                                            
CONECT   26   11                                                            
CONECT   27   14                                                            
CONECT   28   17                                                            
CONECT   29   19                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   56    0
END

Synonyms

Value	Source
(15S)-Hydroperoxy-(11Z,13E)-eicosadienoate	ChEBI
(15S)-Hydroperoxy-(11Z,13E)-eicosadienoic acid	Generator

Molecular Formula

C₂₀H₃₅O₄

Average Mass

339.497

Monoisotopic Mass

339.254083187

IUPAC Name

(11Z,13E,15S)-15-hydroperoxyicosa-11,13-dienoate

Traditional Name

(11Z,13E,15S)-15-hydroperoxyicosa-11,13-dienoate

CAS Registry Number

Not Available

SMILES

[H]\C(CCCCCCCCCC([O-])=O)=C(/[H])\C(\[H])=C(/[H])[C@]([H])(CCCCC)OO

InChI Identifier

InChI=1S/C20H36O4/c1-2-3-13-16-19(24-23)17-14-11-9-7-5-4-6-8-10-12-15-18-20(21)22/h9,11,14,17,19,23H,2-8,10,12-13,15-16,18H2,1H3,(H,21,22)/p-1/b11-9-,17-14+/t19-/m0/s1

InChI Key

KEXNVBSLXJLOPR-XMSPSUPSSA-M

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	6.53	ChemAxon
pKa (Strongest Acidic)	4.95	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	69.59 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	111.42 m³·mol⁻¹	ChemAxon
Polarizability	40.92 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	1	Human

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139036273

PDB ID

Not Available

ChEBI ID

144832

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for (15S)-hydroperoxy-(11Z,13E)-eicosadienoic acid (MMDBc0054761)

MOL for #<Metabolite:0x00007fdb0762e898>

3D MOL for #<Metabolite:0x00007fdb0762e898>

3D SDF for #<Metabolite:0x00007fdb0762e898>

3D-SDF for #<Metabolite:0x00007fdb0762e898>

PDB for #<Metabolite:0x00007fdb0762e898>

3D PDB for #<Metabolite:0x00007fdb0762e898>

SMILES for #<Metabolite:0x00007fdb0762e898>

INCHI for #<Metabolite:0x00007fdb0762e898>

Structure for #<Metabolite:0x00007fdb0762e898>

3D Structure for #<Metabolite:0x00007fdb0762e898>