MiMeDB: Showing metabocard for (2S,3S)-versiconal hemiacetal acetic acid (MMDBc0054844)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:36:10 UTC

Update Date

2022-08-12 20:09:06 UTC

Metabolite ID

MMDBc0054844

Metabolite Identification

Common Name

(2S,3S)-versiconal hemiacetal acetic acid

Description

(2S,3S)-versiconal hemiacetal acetate(1-) belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group. Based on a literature review very few articles have been published on (2S,3S)-versiconal hemiacetal acetate(1-).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221362D          

 31 34  0  0  1  0            999 V2000
   -0.5256    6.1248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5983    4.2125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7913    4.3840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2706    5.3402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532    3.4279    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3683    2.7604    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8227    4.7271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6391    1.9354    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.2102    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5433    2.7604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363    5.1687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532    2.0930    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4366    4.0112    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9937    2.0254    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  7  1  1  0  0  0  0
  8  4  2  0  0  0  0
  8  5  1  0  0  0  0
  9  2  1  1  0  0  0
 10  4  1  0  0  0  0
 11  6  2  0  0  0  0
 12  5  2  0  0  0  0
 13  6  1  0  0  0  0
 14 10  2  0  0  0  0
 14 12  1  0  0  0  0
 15  9  1  0  0  0  0
 15 13  2  0  0  0  0
 16 11  1  0  0  0  0
 17 10  1  0  0  0  0
 17 11  1  0  0  0  0
 18 14  1  0  0  0  0
 18 16  1  0  0  0  0
 19 15  1  0  0  0  0
 19 16  2  0  0  0  0
 20  9  1  0  0  0  0
 21  7  2  0  0  0  0
 22  8  1  0  0  0  0
 23 12  1  0  0  0  0
 24 17  2  0  0  0  0
 25 18  2  0  0  0  0
 26 19  1  0  0  0  0
 20 27  1  6  0  0  0
 28  3  1  0  0  0  0
 28  7  1  0  0  0  0
 29 13  1  0  0  0  0
 29 20  1  0  0  0  0
  9 30  1  6  0  0  0
 20 31  1  1  0  0  0
M  CHG  1  22  -1
M  END


  Mrv1652306172221362D          

 31 34  0  0  1  0            999 V2000
   -0.5256    6.1248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5983    4.2125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7913    4.3840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2706    5.3402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532    3.4279    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3683    2.7604    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8227    4.7271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6391    1.9354    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.2102    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5433    2.7604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363    5.1687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532    2.0930    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4366    4.0112    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9937    2.0254    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  7  1  1  0  0  0  0
  8  4  2  0  0  0  0
  8  5  1  0  0  0  0
  9  2  1  1  0  0  0
 10  4  1  0  0  0  0
 11  6  2  0  0  0  0
 12  5  2  0  0  0  0
 13  6  1  0  0  0  0
 14 10  2  0  0  0  0
 14 12  1  0  0  0  0
 15  9  1  0  0  0  0
 15 13  2  0  0  0  0
 16 11  1  0  0  0  0
 17 10  1  0  0  0  0
 17 11  1  0  0  0  0
 18 14  1  0  0  0  0
 18 16  1  0  0  0  0
 19 15  1  0  0  0  0
 19 16  2  0  0  0  0
 20  9  1  0  0  0  0
 21  7  2  0  0  0  0
 22  8  1  0  0  0  0
 23 12  1  0  0  0  0
 24 17  2  0  0  0  0
 25 18  2  0  0  0  0
 26 19  1  0  0  0  0
 20 27  1  6  0  0  0
 28  3  1  0  0  0  0
 28  7  1  0  0  0  0
 29 13  1  0  0  0  0
 29 20  1  0  0  0  0
  9 30  1  6  0  0  0
 20 31  1  1  0  0  0
M  CHG  1  22  -1
M  END
> <DATABASE_ID>
MMDBc0054844

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(O)OC2=C(C(O)=C3C(=O)C4=C(C=C([O-])C=C4O)C(=O)C3=C2)[C@]1([H])CCOC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H16O9/c1-7(21)28-3-2-9-15-13(29-20(9)27)6-11-16(19(15)26)18(25)14-10(17(11)24)4-8(22)5-12(14)23/h4-6,9,20,22-23,26-27H,2-3H2,1H3/p-1/t9-,20-/m0/s1

> <INCHI_KEY>
DYJNRRXQVSJBAA-LXGOIASLSA-M

> <FORMULA>
C20H15O9

> <MOLECULAR_WEIGHT>
399.332

> <EXACT_MASS>
399.072155643

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
38.949263537684665

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3S)-3-[2-(acetyloxy)ethyl]-2,4,6-trihydroxy-5,10-dioxo-2H,3H,5H,10H-anthra[2,3-b]furan-8-olate

> <JCHEM_LOGP>
2.5256409606666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
7.966752421401425

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.213182986419784

> <JCHEM_PKA_STRONGEST_BASIC>
-4.241333261547408

> <JCHEM_POLAR_SURFACE_AREA>
153.42

> <JCHEM_REFRACTIVITY>
108.65469999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S)-3-[2-(acetyloxy)ethyl]-2,4,6-trihydroxy-5,10-dioxo-2H,3H-anthra[2,3-b]furan-8-olate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0      -0.981  11.433   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.983   7.863   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.477   8.184   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.592   3.613   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.926   5.923   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.505   9.968   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.926   4.383   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.459   6.399   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.259   4.383   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.592   6.693   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.259   5.923   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.924   5.923   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.591   5.923   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.925   6.693   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.258   6.693   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.554   5.153   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.536   8.824   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      14.260   3.613   0.000  0.00  0.00           O-1
HETATM   23  O   UNK     0      11.592   8.233   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       8.925   2.073   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       8.925   8.233   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       6.258   8.233   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       1.014   5.153   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       1.001   9.648   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       3.459   3.907   0.000  0.00  0.00           O+0
HETATM   30  H   UNK     0       4.548   7.488   0.000  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.855   3.781   0.000  0.00  0.00           H+0
CONECT    1    7                                                            
CONECT    2    3    9                                                       
CONECT    3    2   28                                                       
CONECT    4    8   10                                                       
CONECT    5    8   12                                                       
CONECT    6   11   13                                                       
CONECT    7    1   21   28                                                  
CONECT    8    4    5   22                                                  
CONECT    9    2   15   20   30                                             
CONECT   10    4   14   17                                                  
CONECT   11    6   16   17                                                  
CONECT   12    5   14   23                                                  
CONECT   13    6   15   29                                                  
CONECT   14   10   12   18                                                  
CONECT   15    9   13   19                                                  
CONECT   16   11   18   19                                                  
CONECT   17   10   11   24                                                  
CONECT   18   14   16   25                                                  
CONECT   19   15   16   26                                                  
CONECT   20    9   27   29   31                                             
CONECT   21    7                                                            
CONECT   22    8                                                            
CONECT   23   12                                                            
CONECT   24   17                                                            
CONECT   25   18                                                            
CONECT   26   19                                                            
CONECT   27   20                                                            
CONECT   28    3    7                                                       
CONECT   29   13   20                                                       
CONECT   30    9                                                            
CONECT   31   20                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

Synonyms

Value	Source
(2S,3S)-Versiconal hemiacetal acetate	ChEBI
(2S,3S)-Versiconal hemiacetal acetic acid	Generator
(2S,3S)-Versiconal hemiacetal acetic acid(1-)	Generator

Molecular Formula

C₂₀H₁₅O₉

Average Mass

399.332

Monoisotopic Mass

399.072155643

IUPAC Name

(2S,3S)-3-[2-(acetyloxy)ethyl]-2,4,6-trihydroxy-5,10-dioxo-2H,3H,5H,10H-anthra[2,3-b]furan-8-olate

Traditional Name

(2S,3S)-3-[2-(acetyloxy)ethyl]-2,4,6-trihydroxy-5,10-dioxo-2H,3H-anthra[2,3-b]furan-8-olate

CAS Registry Number

Not Available

SMILES

[H][C@]1(O)OC2=C(C(O)=C3C(=O)C4=C(C=C([O-])C=C4O)C(=O)C3=C2)[C@]1([H])CCOC(C)=O

InChI Identifier

InChI=1S/C20H16O9/c1-7(21)28-3-2-9-15-13(29-20(9)27)6-11-16(19(15)26)18(25)14-10(17(11)24)4-8(22)5-12(14)23/h4-6,9,20,22-23,26-27H,2-3H2,1H3/p-1/t9-,20-/m0/s1

InChI Key

DYJNRRXQVSJBAA-LXGOIASLSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Hydroxyanthraquinones

Alternative Parents

Substituents

Hydroxyanthraquinone
Naphthofuran
Coumaran
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenoxide
Vinylogous acid
Carboxylic acid ester
Hemiacetal
Ketone
Carboxylic acid derivative
Oxacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Polyol
Carbonyl group
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Organic oxide
Organic anion
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

phenolate anion (CHEBI:77975 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	2.53	ChemAxon
pKa (Strongest Acidic)	7.21	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	153.42 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	108.65 m³·mol⁻¹	ChemAxon
Polarizability	38.95 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0015429	(3S)-versiconol acetic acid	(2S,3S)-versiconal hemiacetal acetic acid	Versiconal hemiacetal acetate reductase	Reduction	RHEA	34755880
MMDBr0015432	(2S,3S)-versiconal hemiacetal acetic acid	(2S-3S)-versiconal hemiacetal	Versiconal hemiacetal acetate esterase	Ester hydrolysis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	4

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

31150449

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

86289433

PDB ID

Not Available

ChEBI ID

77975

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for (2S,3S)-versiconal hemiacetal acetic acid (MMDBc0054844)

MOL for #<Metabolite:0x000055d24ad82620>

3D MOL for #<Metabolite:0x000055d24ad82620>

3D SDF for #<Metabolite:0x000055d24ad82620>

3D-SDF for #<Metabolite:0x000055d24ad82620>

PDB for #<Metabolite:0x000055d24ad82620>

3D PDB for #<Metabolite:0x000055d24ad82620>

SMILES for #<Metabolite:0x000055d24ad82620>

INCHI for #<Metabolite:0x000055d24ad82620>

Structure for #<Metabolite:0x000055d24ad82620>

3D Structure for #<Metabolite:0x000055d24ad82620>