MiMeDB: Showing metabocard for (3S,6R)-6-isopropenyl-3-methyloxepan-2-one (MMDBc0054920)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:37:50 UTC

Update Date

2022-08-12 20:09:08 UTC

Metabolite ID

MMDBc0054920

Metabolite Identification

Common Name

(3S,6R)-6-isopropenyl-3-methyloxepan-2-one

Description

(3S,6R)-3-methyl-6-(prop-1-en-2-yl)oxepan-2-one belongs to the class of organic compounds known as lactones. These are cyclic esters of hydroxy carboxylic acids, containing a 1-oxacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring (3S,6R)-3-methyl-6-(prop-1-en-2-yl)oxepan-2-one is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review very few articles have been published on (3S,6R)-3-methyl-6-(prop-1-en-2-yl)oxepan-2-one.

Structure

MOL SDF PDB SMILES InChI

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       0.265   4.855   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.933   4.855   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.037  -2.216   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.329   0.375   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.986   1.876   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.211   1.876   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.599   4.085   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.369  -0.829   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.599   2.545   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.829  -0.829   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.161  -2.216   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -0.131   0.375   0.000  0.00  0.00           O+0
HETATM   13  H   UNK     0       1.550  -2.133   0.000  0.00  0.00           H+0
HETATM   14  H   UNK     0       2.903   3.364   0.000  0.00  0.00           H+0
CONECT    1    7                                                            
CONECT    2    7                                                            
CONECT    3    8                                                            
CONECT    4    5    8                                                       
CONECT    5    4    9                                                       
CONECT    6    9   12                                                       
CONECT    7    1    2    9                                                  
CONECT    8    3    4   10   13                                             
CONECT    9    5    6    7   14                                             
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12    6   10                                                       
CONECT   13    8                                                            
CONECT   14    9                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

Synonyms

Not Available

Molecular Formula

C₁₀H₁₆O₂

Average Mass

168.236

Monoisotopic Mass

168.115029755

IUPAC Name

(3S,6R)-3-methyl-6-(prop-1-en-2-yl)oxepan-2-one

Traditional Name

(3S,6R)-3-methyl-6-(prop-1-en-2-yl)oxepan-2-one

CAS Registry Number

Not Available

SMILES

[H][C@]1(C)CC[C@@]([H])(COC1=O)C(C)=C

InChI Identifier

InChI=1S/C10H16O2/c1-7(2)9-5-4-8(3)10(11)12-6-9/h8-9H,1,4-6H2,2-3H3/t8-,9-/m0/s1

InChI Key

BBKYOZJVRPOMGL-IUCAKERBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lactones. These are cyclic esters of hydroxy carboxylic acids, containing a 1-oxacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Not Available

Direct Parent

Lactones

Alternative Parents

Substituents

Caprolactone
Oxepane
Lactone
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

6-isopropenyl-3-methyloxepan-2-one (CHEBI:64232 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	2.33	ChemAxon
pKa (Strongest Basic)	-7.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	47.48 m³·mol⁻¹	ChemAxon
Polarizability	18.9 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum
MS	Mass Spectrum (Electron Ionization)	Not Available	2022-08-06	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0016634	(1S,4R)-isodihydrocarvone	(3S,6R)-6-isopropenyl-3-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016635	(1S,4R)-isodihydrocarvone	(3S,6R)-6-isopropenyl-3-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	1	Human

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

391459

KEGG Compound ID

C11418

BioCyc ID

CPD-10069

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

443187

PDB ID

Not Available

ChEBI ID

64232

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for (3S,6R)-6-isopropenyl-3-methyloxepan-2-one (MMDBc0054920)

MOL for #<Metabolite:0x0000564af3a270a8>

3D MOL for #<Metabolite:0x0000564af3a270a8>

3D SDF for #<Metabolite:0x0000564af3a270a8>

3D-SDF for #<Metabolite:0x0000564af3a270a8>

PDB for #<Metabolite:0x0000564af3a270a8>

3D PDB for #<Metabolite:0x0000564af3a270a8>

SMILES for #<Metabolite:0x0000564af3a270a8>

INCHI for #<Metabolite:0x0000564af3a270a8>

Structure for #<Metabolite:0x0000564af3a270a8>

3D Structure for #<Metabolite:0x0000564af3a270a8>