Showing metabocard for (R)-piperazine-2-carboxylic acid (MMDBc0055049)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2022-06-17 19:40:46 UTC
Update Date2022-08-12 20:09:12 UTC
Metabolite IDMMDBc0055049
Metabolite Identification
Common Name(R)-piperazine-2-carboxylic acid
Description(R)-Piperazine-2-carboxylic acid, also known as (R)-2-piperazinecarboxylate, belongs to the class of organic compounds known as d-alpha-amino acids. These are alpha amino acids which have the D-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on (R)-Piperazine-2-carboxylic acid.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x0000564af3720e90>


  Mrv1652306172221402D          

 10 10  0  0  1  0            999 V2000
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  4  3  1  0  0  0  0
  4  5  1  6  0  0  0
  6  1  1  0  0  0  0
  6  3  1  0  0  0  0
  7  2  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  2  0  0  0  0
  9  5  1  0  0  0  0
  4 10  1  1  0  0  0
M  END
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3D MOL for #<Metabolite:0x0000564af3720e90>

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3D SDF for #<Metabolite:0x0000564af3720e90>

  Mrv1652306172221402D          

 10 10  0  0  1  0            999 V2000
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  4  3  1  0  0  0  0
  4  5  1  6  0  0  0
  6  1  1  0  0  0  0
  6  3  1  0  0  0  0
  7  2  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  2  0  0  0  0
  9  5  1  0  0  0  0
  4 10  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0055049

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@]1(CNCCN1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H10N2O2/c8-5(9)4-3-6-1-2-7-4/h4,6-7H,1-3H2,(H,8,9)/t4-/m1/s1

> <INCHI_KEY>
JSSXHAMIXJGYCS-SCSAIBSYSA-N

> <FORMULA>
C5H10N2O2

> <MOLECULAR_WEIGHT>
130.147

> <EXACT_MASS>
130.07422757

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
19

> <JCHEM_AVERAGE_POLARIZABILITY>
12.844874432934326

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-piperazine-2-carboxylic acid

> <JCHEM_LOGP>
-3.5175665976350805

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3140840323328256

> <JCHEM_PKA_STRONGEST_BASIC>
9.482352064110303

> <JCHEM_POLAR_SURFACE_AREA>
61.36

> <JCHEM_REFRACTIVITY>
31.278700000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-piperazine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x0000564af3720e90>
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PDB for #<Metabolite:0x0000564af3720e90>
HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      -0.000   0.000   0.000  0.00  0.00           N+0
HETATM    7  N   UNK     0       2.667   1.540   0.000  0.00  0.00           N+0
HETATM    8  O   UNK     0       0.000   4.620   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       2.667   4.620   0.000  0.00  0.00           O+0
HETATM   10  H   UNK     0       2.667   3.080   0.000  0.00  0.00           H+0
CONECT    1    2    6                                                       
CONECT    2    1    7                                                       
CONECT    3    4    6                                                       
CONECT    4    3    5    7   10                                             
CONECT    5    4    8    9                                                  
CONECT    6    1    3                                                       
CONECT    7    2    4                                                       
CONECT    8    5                                                            
CONECT    9    5                                                            
CONECT   10    4                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   20    0
END

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3D PDB for #<Metabolite:0x0000564af3720e90>
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SMILES for #<Metabolite:0x0000564af3720e90>
[H][C@@]1(CNCCN1)C(O)=O
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INCHI for #<Metabolite:0x0000564af3720e90>
InChI=1S/C5H10N2O2/c8-5(9)4-3-6-1-2-7-4/h4,6-7H,1-3H2,(H,8,9)/t4-/m1/s1
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Synonyms
ValueSource
(R)-2-PiperazinecarboxylateKegg
(R)-2-Piperazinecarboxylic acidGenerator
(R)-Piperazine-2-carboxylateGenerator
Molecular FormulaC5H10N2O2
Average Mass130.147
Monoisotopic Mass130.07422757
IUPAC Name(2R)-piperazine-2-carboxylic acid
Traditional Name(2R)-piperazine-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CNCCN1)C(O)=O
InChI Identifier
InChI=1S/C5H10N2O2/c8-5(9)4-3-6-1-2-7-4/h4,6-7H,1-3H2,(H,8,9)/t4-/m1/s1
InChI KeyJSSXHAMIXJGYCS-SCSAIBSYSA-N