MiMeDB: Showing metabocard for 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid (MMDBc0055204)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:46:11 UTC

Update Date

2022-08-12 20:09:16 UTC

Metabolite ID

MMDBc0055204

Metabolite Identification

Common Name

2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid

Description

CHEBI:142971 belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on CHEBI:142971.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221462D          

 23 22  0  0  1  0            999 V2000
    3.6829    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2539    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6829    4.1250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895   -1.0164    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  3  1  0  0  0  0
  8  4  1  0  0  0  0
  9  6  1  0  0  0  0
 11  3  1  6  0  0  0
 11  4  1  0  0  0  0
 11 10  1  0  0  0  0
 12  1  1  0  0  0  0
  6 13  1  1  0  0  0
 14  2  1  4  0  0  0
 14  7  2  0  0  0  0
 15  5  1  4  0  0  0
 15  8  2  0  0  0  0
 16  7  1  0  0  0  0
 17  8  1  0  0  0  0
 18  9  2  0  0  0  0
 19  9  1  0  0  0  0
 20 10  2  0  0  0  0
 21 10  1  0  0  0  0
 11 22  1  1  0  0  0
  6 23  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0055204

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@](N)(CN=C(O)C[C@@](O)(CC(O)=NCCN)C(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H20N4O7/c12-1-2-14-7(16)3-11(22,10(20)21)4-8(17)15-5-6(13)9(18)19/h6,22H,1-5,12-13H2,(H,14,16)(H,15,17)(H,18,19)(H,20,21)/t6-,11-/m0/s1

> <INCHI_KEY>
GKMWYFDLBOVUPV-KGFZYKRKSA-N

> <FORMULA>
C11H20N4O7

> <MOLECULAR_WEIGHT>
320.302

> <EXACT_MASS>
320.133199

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
29.920221790315303

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-3-{[(2S)-2-amino-2-carboxyethyl]-C-hydroxycarbonimidoyl}-2-{[(2-aminoethyl)-C-hydroxycarbonimidoyl]methyl}-2-hydroxypropanoic acid

> <JCHEM_LOGP>
-8.021418468611781

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.076854366883984

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.9700692865964005

> <JCHEM_PKA_STRONGEST_BASIC>
9.889254167779056

> <JCHEM_POLAR_SURFACE_AREA>
212.04999999999998

> <JCHEM_REFRACTIVITY>
71.8346

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-{[(2S)-2-amino-2-carboxyethyl]-C-hydroxycarbonimidoyl}-2-{[(2-aminoethyl)-C-hydroxycarbonimidoyl]methyl}-2-hydroxypropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       6.875   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.541   5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.207   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.494  -1.897   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.264  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.207   3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       6.875   7.700   0.000  0.00  0.00           N+0
HETATM   13  N   UNK     0       7.494   0.770   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       5.541   3.850   0.000  0.00  0.00           N+0
HETATM   15  N   UNK     0       5.954  -1.897   0.000  0.00  0.00           N+0
HETATM   16  O   UNK     0       2.874   3.850   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       5.954   0.770   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      10.574   0.770   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      10.574  -1.897   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       1.540  -1.540   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       0.206   0.770   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       2.104   2.104   0.000  0.00  0.00           O+0
HETATM   23  H   UNK     0       9.034  -1.897   0.000  0.00  0.00           H+0
CONECT    1    2   12                                                       
CONECT    2    1   14                                                       
CONECT    3    7   11                                                       
CONECT    4    8   11                                                       
CONECT    5    6   15                                                       
CONECT    6    5    9   13   23                                             
CONECT    7    3   14   16                                                  
CONECT    8    4   15   17                                                  
CONECT    9    6   18   19                                                  
CONECT   10   11   20   21                                                  
CONECT   11    3    4   10   22                                             
CONECT   12    1                                                            
CONECT   13    6                                                            
CONECT   14    2    7                                                       
CONECT   15    5    8                                                       
CONECT   16    7                                                            
CONECT   17    8                                                            
CONECT   18    9                                                            
CONECT   19    9                                                            
CONECT   20   10                                                            
CONECT   21   10                                                            
CONECT   22   11                                                            
CONECT   23    6                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   44    0
END

Synonyms

Not Available

Molecular Formula

C₁₁H₂₀N₄O₇

Average Mass

320.302

Monoisotopic Mass

320.133199

IUPAC Name

(2S)-3-{[(2S)-2-amino-2-carboxyethyl]-C-hydroxycarbonimidoyl}-2-{[(2-aminoethyl)-C-hydroxycarbonimidoyl]methyl}-2-hydroxypropanoic acid

Traditional Name

(2S)-3-{[(2S)-2-amino-2-carboxyethyl]-C-hydroxycarbonimidoyl}-2-{[(2-aminoethyl)-C-hydroxycarbonimidoyl]methyl}-2-hydroxypropanoic acid

CAS Registry Number

Not Available

SMILES

[H][C@](N)(CN=C(O)C[C@@](O)(CC(O)=NCCN)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C11H20N4O7/c12-1-2-14-7(16)3-11(22,10(20)21)4-8(17)15-5-6(13)9(18)19/h6,22H,1-5,12-13H2,(H,14,16)(H,15,17)(H,18,19)(H,20,21)/t6-,11-/m0/s1

InChI Key

GKMWYFDLBOVUPV-KGFZYKRKSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Hydroxy fatty acid
Branched fatty acid
Fatty acyl
Fatty acid
Hydroxy acid
Dicarboxylic acid or derivatives
Alpha-hydroxy acid
Tertiary alcohol
Amino acid
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboxylic acid
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary amine
Organooxygen compound
Organonitrogen compound
Primary aliphatic amine
Carbonyl group
Amine
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	-8	ChemAxon
pKa (Strongest Acidic)	0.97	ChemAxon
pKa (Strongest Basic)	9.89	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	212.05 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	71.83 m³·mol⁻¹	ChemAxon
Polarizability	29.92 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_5_53) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0016974	(S)-2,3-diaminopropanoic acid	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase	Synthesis	RHEA	34755880
MMDBr0016975	(S)-2,3-diaminopropanoic acid	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase	Synthesis	RHEA	34755880
MMDBr0016976	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid	Adenosine monophosphate	Staphyloferrin B synthase	Synthesis	RHEA	34755880
MMDBr0016977	2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid	Adenosine monophosphate	Staphyloferrin B synthase	Synthesis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Firmicutes	1	Human

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

137333865

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoic acid (MMDBc0055204)

MOL for #<Metabolite:0x00007fa4b4f53600>

3D MOL for #<Metabolite:0x00007fa4b4f53600>

3D SDF for #<Metabolite:0x00007fa4b4f53600>

3D-SDF for #<Metabolite:0x00007fa4b4f53600>

PDB for #<Metabolite:0x00007fa4b4f53600>

3D PDB for #<Metabolite:0x00007fa4b4f53600>

SMILES for #<Metabolite:0x00007fa4b4f53600>

INCHI for #<Metabolite:0x00007fa4b4f53600>

Structure for #<Metabolite:0x00007fa4b4f53600>

3D Structure for #<Metabolite:0x00007fa4b4f53600>