MiMeDB: Showing metabocard for 4-(phosphooxy)-L-threonine (MMDBc0055461)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:52:36 UTC

Update Date

2022-08-12 20:09:22 UTC

Metabolite ID

MMDBc0055461

Metabolite Identification

Common Name

4-(phosphooxy)-L-threonine

Description

4-Phosphooxy-L-threonine belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. 4-Phosphooxy-L-threonine is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review very few articles have been published on 4-Phosphooxy-L-threonine.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221522D          

 15 14  0  0  1  0            999 V2000
    1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.7145    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4750   -1.4289    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -2.1434    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -0.7145    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -0.8250    0.0000    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    1.6500   -1.4289    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8875   -0.7145    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  3  5  1  6  0  0  0
  2  6  1  6  0  0  0
  7  4  2  0  0  0  0
  8  4  1  0  0  0  0
 12  1  1  0  0  0  0
 13  9  1  0  0  0  0
 13 10  1  0  0  0  0
 13 11  2  0  0  0  0
 13 12  1  0  0  0  0
  2 14  1  6  0  0  0
  3 15  1  6  0  0  0
M  CHG  2   8  -1   9  -1
M  END
> <DATABASE_ID>
MMDBc0055461

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](O)(COP(O)([O-])=O)[C@]([H])(N)C([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C4H10NO7P/c5-3(4(7)8)2(6)1-12-13(9,10)11/h2-3,6H,1,5H2,(H,7,8)(H2,9,10,11)/p-2/t2-,3+/m1/s1

> <INCHI_KEY>
FKHAKIJOKDGEII-GBXIJSLDSA-L

> <FORMULA>
C4H8NO7P

> <MOLECULAR_WEIGHT>
213.083

> <EXACT_MASS>
213.004935759

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
15.856035889205792

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
-2

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3S)-2-amino-4-(hydrogen phosphonooxy)-3-hydroxybutanoate

> <JCHEM_LOGP>
-3.876164191197906

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
2.074086870907077

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3137863600810498

> <JCHEM_PKA_STRONGEST_BASIC>
8.926715134721942

> <JCHEM_POLAR_SURFACE_AREA>
155.96999999999997

> <JCHEM_REFRACTIVITY>
48.591800000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S)-2-amino-4-(hydrogen phosphonooxy)-3-hydroxybutanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       2.310  -1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.850  -1.334   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.620  -2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.160  -2.667   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       3.850  -4.001   0.000  0.00  0.00           N+0
HETATM    6  O   UNK     0       4.620  -0.000   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       6.930  -4.001   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       6.930  -1.334   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      -1.540   0.000   0.000  0.00  0.00           O-1
HETATM   10  O   UNK     0       0.000   1.540   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       0.000  -1.540   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       1.540   0.000   0.000  0.00  0.00           O+0
HETATM   13  P   UNK     0       0.000   0.000   0.000  0.00  0.00           P+0
HETATM   14  H   UNK     0       3.080  -2.667   0.000  0.00  0.00           H+0
HETATM   15  H   UNK     0       5.390  -1.334   0.000  0.00  0.00           H+0
CONECT    1    2   12                                                       
CONECT    2    1    3    6   14                                             
CONECT    3    2    4    5   15                                             
CONECT    4    3    7    8                                                  
CONECT    5    3                                                            
CONECT    6    2                                                            
CONECT    7    4                                                            
CONECT    8    4                                                            
CONECT    9   13                                                            
CONECT   10   13                                                            
CONECT   11   13                                                            
CONECT   12    1   13                                                       
CONECT   13    9   10   11   12                                             
CONECT   14    2                                                            
CONECT   15    3                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

Synonyms

Value	Source
4-(Phosphooxy)-L-threonine	ChEBI
4-(Phosphohydroxy)-L-threonine	MeSH
4-Phospho-hydroxy-threonine	MeSH
4-Phosphohydroxythreonine	MeSH
4-Phosphothreonine	MeSH

Molecular Formula

C₄H₈NO₇P

Average Mass

213.083

Monoisotopic Mass

213.004935759

IUPAC Name

(2S,3S)-2-amino-4-(hydrogen phosphonooxy)-3-hydroxybutanoate

Traditional Name

(2S,3S)-2-amino-4-(hydrogen phosphonooxy)-3-hydroxybutanoate

CAS Registry Number

Not Available

SMILES

[H][C@@](O)(COP(O)([O-])=O)[C@]([H])(N)C([O-])=O

InChI Identifier

InChI=1S/C4H10NO7P/c5-3(4(7)8)2(6)1-12-13(9,10)11/h2-3,6H,1,5H2,(H,7,8)(H2,9,10,11)/p-2/t2-,3+/m1/s1

InChI Key

FKHAKIJOKDGEII-GBXIJSLDSA-L

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Beta-hydroxy acid
Short-chain hydroxy acid
Hydroxy acid
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acid
Amino acid
Carboxylic acid salt
Secondary alcohol
Carboxylic acid
Monocarboxylic acid or derivatives
Organic salt
Organic nitrogen compound
Primary amine
Amine
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Primary aliphatic amine
Alcohol
Organic oxygen compound
Organic oxide
Carbonyl group
Organopnictogen compound
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

organophosphate oxoanion (CHEBI:58452 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	-3.9	ChemAxon
pKa (Strongest Acidic)	1.31	ChemAxon
pKa (Strongest Basic)	8.93	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	155.97 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	48.59 m³·mol⁻¹	ChemAxon
Polarizability	15.86 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013544	alpha-Ketoglutarate	(R)-3-hydroxy-2-oxo-4-phosphooxybutanoic acid	Phosphoserine aminotransferase	Amine group addition	RHEA	34755880
MMDBr0015135	4-(phosphooxy)-L-threonine	3-Amino-2-oxopropyl phosphate	4-hydroxythreonine-4-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria	Proteobacteria	241	Human ; Human feces; Turkey ; Chicken ; Pig ; Lion
Bacteria	Firmicutes	32	Human ; Human feces; Cattle
Bacteria	Bacteroidetes	10	Human ; Human feces
Bacteria	Actinobacteria	14	Human ; Cattle
Bacteria/NULL	Proteobacteria	1	Human ; Human feces; Turkey ; Chicken ; Pig ; Lion
Bacteria	Chloroflexi	1
Bacteria	Spirochaetes	4
Archaea/Archaea	Euryarchaeota	3
Bacteria	Planctomycetes	1
Eukaryota/Fungi	Ascomycota	2
Bacteria	Aquificae	4
Bacteria	Cyanobacteria	6
Bacteria	Chlorobi	1
Bacteria	nah	1

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26333185

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

45480653

PDB ID

Not Available

ChEBI ID

58452

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 4-(phosphooxy)-L-threonine (MMDBc0055461)

MOL for #<Metabolite:0x00007fe253ac29b0>

3D MOL for #<Metabolite:0x00007fe253ac29b0>

3D SDF for #<Metabolite:0x00007fe253ac29b0>

3D-SDF for #<Metabolite:0x00007fe253ac29b0>

PDB for #<Metabolite:0x00007fe253ac29b0>

3D PDB for #<Metabolite:0x00007fe253ac29b0>

SMILES for #<Metabolite:0x00007fe253ac29b0>

INCHI for #<Metabolite:0x00007fe253ac29b0>

Structure for #<Metabolite:0x00007fe253ac29b0>

3D Structure for #<Metabolite:0x00007fe253ac29b0>