MiMeDB: Showing metabocard for 4-hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one (MMDBc0055510)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:56:42 UTC

Update Date

2022-08-12 20:09:23 UTC

Metabolite ID

MMDBc0055510

Metabolite Identification

Common Name

4-hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one

Description

HPPO(1-) belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone. Based on a literature review a small amount of articles have been published on HPPO(1-).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221562D          

 14 15  0  0  0  0            999 V2000
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    4.9500    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -2.8579    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  7  2  1  0  0  0  0
  7  6  2  0  0  0  0
  8  4  1  0  0  0  0
  8  5  2  0  0  0  0
  9  4  2  0  0  0  0
  9  7  1  0  0  0  0
 10  5  1  0  0  0  0
 11  3  2  0  0  0  0
 11  6  1  0  0  0  0
 12  8  1  0  0  0  0
 13 10  2  0  0  0  0
 14  9  1  0  0  0  0
 14 10  1  0  0  0  0
M  CHG  1  12  -1
M  END
> <DATABASE_ID>
MMDBc0055510

> <DATABASE_NAME>
MIME

> <SMILES>
[O-]C1=CC(=O)OC(=C1)C1=CN=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C10H7NO3/c12-8-4-9(14-10(13)5-8)7-2-1-3-11-6-7/h1-6,12H/p-1

> <INCHI_KEY>
HWOWEGAQDKKHDR-UHFFFAOYSA-M

> <FORMULA>
C10H6NO3

> <MOLECULAR_WEIGHT>
188.163

> <EXACT_MASS>
188.035316637

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
20

> <JCHEM_AVERAGE_POLARIZABILITY>
17.642261570091105

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-oxo-6-(pyridin-3-yl)-2H-pyran-4-olate

> <JCHEM_LOGP>
0.42724105199999995

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.994741292930596

> <JCHEM_PKA_STRONGEST_BASIC>
4.2045228184531185

> <JCHEM_POLAR_SURFACE_AREA>
62.25

> <JCHEM_REFRACTIVITY>
62.0643

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-oxo-6-(pyridin-3-yl)pyran-4-olate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667   9.240   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.001   3.850   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.334   8.470   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.667   6.160   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001   8.470   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0      -4.001   2.310   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0      -0.000   9.240   0.000  0.00  0.00           O-1
HETATM   13  O   UNK     0      -5.335   9.240   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -4.001   6.930   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    7                                                       
CONECT    3    1   11                                                       
CONECT    4    8    9                                                       
CONECT    5    8   10                                                       
CONECT    6    7   11                                                       
CONECT    7    2    6    9                                                  
CONECT    8    4    5   12                                                  
CONECT    9    4    7   14                                                  
CONECT   10    5   13   14                                                  
CONECT   11    3    6                                                       
CONECT   12    8                                                            
CONECT   13   10                                                            
CONECT   14    9   10                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

Synonyms

Value	Source
4-Hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one	ChEBI

Molecular Formula

C₁₀H₆NO₃

Average Mass

188.163

Monoisotopic Mass

188.035316637

IUPAC Name

2-oxo-6-(pyridin-3-yl)-2H-pyran-4-olate

Traditional Name

2-oxo-6-(pyridin-3-yl)pyran-4-olate

CAS Registry Number

Not Available

SMILES

[O-]C1=CC(=O)OC(=C1)C1=CN=CC=C1

InChI Identifier

InChI=1S/C10H7NO3/c12-8-4-9(14-10(13)5-8)7-2-1-3-11-6-7/h1-6,12H/p-1

InChI Key

HWOWEGAQDKKHDR-UHFFFAOYSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrans

Sub Class

Pyranones and derivatives

Direct Parent

Pyranones and derivatives

Alternative Parents

Substituents

Pyranone
Pyridine
Heteroaromatic compound
Vinylogous acid
Lactone
Oxacycle
Azacycle
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organic anion
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	0.43	ChemAxon
pKa (Strongest Acidic)	6.99	ChemAxon
pKa (Strongest Basic)	4.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	62.25 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	62.06 m³·mol⁻¹	ChemAxon
Polarizability	17.64 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0017406	Hydrogen Ion	4-hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one	Non-reducing polyketide synthase olcA	Synthesis	RHEA	34755880
MMDBr0017407	Hydrogen Ion	4-hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one	Non-reducing polyketide synthase olcA	Synthesis	RHEA	34755880
MMDBr0017408	Farnesyl pyrophosphate	4-hydroxy-3-[(2E,6E)-farnesyl]-6-(pyridin-3-yl)-2H-pyran-2-one	Polyprenyl transferase pyr6	Transfer of a polyprenyl group	RHEA	34755880
MMDBr0017409	Farnesyl pyrophosphate	4-hydroxy-3-[(2E,6E)-farnesyl]-6-(pyridin-3-yl)-2H-pyran-2-one	Polyprenyl transferase pyr6	Transfer of a polyprenyl group	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146170786

PDB ID

Not Available

ChEBI ID

149707

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 4-hydroxy-6-(pyridin-3-yl)-2H-pyran-2-one (MMDBc0055510)

MOL for #<Metabolite:0x00007fa4a425daa0>

3D MOL for #<Metabolite:0x00007fa4a425daa0>

3D SDF for #<Metabolite:0x00007fa4a425daa0>

3D-SDF for #<Metabolite:0x00007fa4a425daa0>

PDB for #<Metabolite:0x00007fa4a425daa0>

3D PDB for #<Metabolite:0x00007fa4a425daa0>

SMILES for #<Metabolite:0x00007fa4a425daa0>

INCHI for #<Metabolite:0x00007fa4a425daa0>

Structure for #<Metabolite:0x00007fa4a425daa0>

3D Structure for #<Metabolite:0x00007fa4a425daa0>