MiMeDB: Showing metabocard for beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose (MMDBc0055773)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-17 20:04:58 UTC

Update Date

2022-08-12 20:09:27 UTC

Metabolite ID

MMDBc0055773

Metabolite Identification

Common Name

beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose

Description

beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose, also known as beta-L-araf-(1->2)-beta-L-araf or 2-O-β-L-arabinofuranosyl-β-L-arabinofuranose, belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. Based on a literature review very few articles have been published on beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
2-O-beta-L-Arabinofuranosyl-beta-L-arabinofuranose	ChEBI
beta-L-Araf-(1->2)-beta-L-araf	ChEBI
2-O-b-L-Arabinofuranosyl-b-L-arabinofuranose	Generator
2-O-Β-L-arabinofuranosyl-β-L-arabinofuranose	Generator
b-L-Araf-(1->2)-b-L-araf	Generator
Β-L-araf-(1->2)-β-L-araf	Generator
b-L-Arabinofuranosyl-(1->2)-b-L-arabinofuranose	Generator
Β-L-arabinofuranosyl-(1->2)-β-L-arabinofuranose	Generator

Molecular Formula

C₁₀H₁₈O₉

Average Mass

282.245

Monoisotopic Mass

282.09508216

IUPAC Name

(2R,3R,4R,5S)-2-{[(2S,3R,4S,5S)-2,4-dihydroxy-5-(hydroxymethyl)oxolan-3-yl]oxy}-5-(hydroxymethyl)oxolane-3,4-diol

Traditional Name

(2R,3R,4R,5S)-2-{[(2S,3R,4S,5S)-2,4-dihydroxy-5-(hydroxymethyl)oxolan-3-yl]oxy}-5-(hydroxymethyl)oxolane-3,4-diol

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

Not Available

InChI Key

YKHKYDDELRYDNQ-WGLSOIFHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

O-glycosyl compound
Disaccharide
Tetrahydrofuran
Secondary alcohol
Hemiacetal
Oxacycle
Organoheterocyclic compound
Acetal
Hydrocarbon derivative
Primary alcohol
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

disaccharide (CHEBI:73180 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0015478	beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose	beta-L-arabinofuranose	Non-reducing end beta-L-arabinofuranosidase	arabinofuranosidase	RHEA	34755880
MMDBr0015645	4-O-(beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranosyl)-(2S,4S)-4-hydroxyproline	4-O-(beta-L-arabinofuranosyl)-(2S,4S)-4-hydroxyproline	Beta-L-arabinobiosidase	Removal of L-arabinofuranose-beta-1,2-L-arabinofuranose disaccharide from various substrates	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Actinobacteria	1	Human ; Human feces

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28639226

KEGG Compound ID

C20568

BioCyc ID

CPD-15094

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71306364

PDB ID

Not Available

ChEBI ID

73180

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose (MMDBc0055773)

MOL for #<Metabolite:0x000055c797c164c0>

3D MOL for #<Metabolite:0x000055c797c164c0>

3D SDF for #<Metabolite:0x000055c797c164c0>

3D-SDF for #<Metabolite:0x000055c797c164c0>

PDB for #<Metabolite:0x000055c797c164c0>

3D PDB for #<Metabolite:0x000055c797c164c0>

SMILES for #<Metabolite:0x000055c797c164c0>

INCHI for #<Metabolite:0x000055c797c164c0>

Structure for #<Metabolite:0x000055c797c164c0>

3D Structure for #<Metabolite:0x000055c797c164c0>