MiMeDB: Showing metabocard for Chenodeoxycholylcitrulline (MMDBc0057249)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-11-10 23:36:35 UTC

Update Date

2024-04-30 20:56:53 UTC

Metabolite ID

MMDBc0057249

Metabolite Identification

Common Name

Chenodeoxycholylcitrulline

Description

Chenodeoxycholylcitrulline belongs to a class of molecules known as bile acid-amino acid conjugates. These are bile acid conjugates that consist of a primary bile acid such as cholic acid, doxycholic acid and chenodeoxycholic acid, conjugated to an amino acid. Chenodeoxycholylcitrulline consists of the bile acid chenodeoxycholic acid conjugated to the amino acid Citrulline conjugated at the C24 acyl site.Bile acids play an important role in regulating various physiological systems, such as fat digestion, cholesterol metabolism, vitamin absorption, liver function, and enterohepatic circulation through their combined signaling, detergent, and antimicrobial mechanisms (PMID: 34127070 ). Bile acids also act as detergents in the gut and support the absorption of fats through the intestinal membrane. These same properties allow for the disruption of bacterial membranes, thereby allowing them to serve a bacteriocidal or bacteriostatic function. In humans (and other mammals) bile acids are normally conjugated with the amino acids glycine and taurine by the liver. This conjugation catalyzed by two liver enzymes, bile acid CoA ligase (BAL) and bile acid CoA: amino acid N-acyltransferase (BAT). Glycine and taurine bound BAs are also referred to as bile salts due to their decreased pKa and complete ionization resulting in these compounds being present as anions in vivo. Unlike glycine and taurine-conjugated bile acids, these recently discovered bile acids, such as Chenodeoxycholylcitrulline, are produced by the gut microbiota, making them secondary bile acids (PMID: 32103176 ) or microbially conjugated bile acids (MCBAs) (PMID: 34127070 ). Evidence suggests that these bile acid-amino acid conjugates are produced by microbes belonging to Clostridia species (PMID: 32103176 ). These unusual bile acid-amino acid conjugates are found in higher frequency in patients with inflammatory bowel disease (IBD), cystic fibrosis (CF) and in infants (PMID: 32103176 ). Chenodeoxycholylcitrulline appears to act as an agonist for the farnesoid X receptor (FXR) and it can also lead to reduced expression of bile acid synthesis genes (PMID: 32103176 ). It currently appears that microbially conjugated bile acids (MCBAs) or amino acid-bile acid conjugates are only conjugated to cholic acid, deoxycholic acid and chenodeoxycholic acid (PMID: 34127070 ). It has been estimated that if microbial conjugation of bile acids is very promiscuous and occurs for all potential oxidized, epimerized, and dehydroxylated states of each hydroxyl group present on cholic acid (C3, C7, C12) in addition to ring orientation, the total number of potential human bile acid conjugates could be over 2800 (PMID: 34127070 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652308302121022D          

 39 42  0  0  0  0            999 V2000
   11.0730   -3.4133    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -4.6508    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.5019   -3.4133    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2164   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9309   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -3.8258    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -2.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5032   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2177   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -4.6508    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6466   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7329   -2.5929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5398   -2.4213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9523   -3.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7593   -3.3073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3113   -2.6942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0564   -1.9096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1183   -2.8658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3732   -3.6504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1802   -3.8219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.4352   -4.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2421   -4.7781    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.8831   -5.2196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0762   -5.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8212   -4.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2692   -4.8766    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0142   -4.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4622   -4.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6552   -4.5335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4003   -3.7489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7872   -4.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -2.5883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 24 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 16 35  1  0  0  0  0
 19 35  1  0  0  0  0
 35 36  1  0  0  0  0
  8 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
M  END

HMDB0242404
     RDKit          3D
Chenodeoxycholylcitrulline
 90 93  0  0  0  0  0  0  0  0999 V2000
    1.5624   -2.7600    1.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7058   -1.4720    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5711   -0.4053    0.8301 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9075   -0.3502    1.5589 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8010    0.6643    0.9931 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4017    1.3176   -0.0076 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0704    0.9202    1.5312 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.9373    1.9513    0.9241 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2696    1.3537    0.5840 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1674    2.3643   -0.0538 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5245    1.7667   -0.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3642    0.6639   -1.3364 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.4917   -0.0571   -1.8153 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3230   -1.1265   -2.7124 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6386    0.2576   -1.4397 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0284    3.0374    1.9191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4608    2.9372    3.0730 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7044    4.2182    1.7098 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6035   -1.6639    0.7314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3245   -2.8855    1.2586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6662   -2.4102    1.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9204   -1.0358    1.1312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0567   -0.8361    0.2502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8711   -2.0897   -0.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1999   -2.9430   -0.9324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1642   -1.6886   -0.8070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0046   -0.7213   -1.9109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3612   -0.1832   -2.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9696    0.5849   -1.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9602    1.4241   -1.7201 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0174    1.3448   -0.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6577    1.5415   -0.8680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0748    0.4180   -1.6537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6739    0.9833   -3.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8208   -0.1516   -1.0742 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7499    0.9105   -0.9424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5206    0.0810   -0.6438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5575   -0.5110    0.7466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1335    0.6135    1.6691 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -2.6438    0.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1957   -2.8224    2.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9389   -3.6521    1.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6421   -1.3343    2.5251 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1287    0.5805    0.7204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8391   -0.7261   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3887   -1.3441    1.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6602   -0.1832    2.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4496    0.4122    2.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4758    2.3483    0.0071 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1453    0.4622   -0.0734 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7570    0.9405    1.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3928    3.2189    0.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7468    2.7886   -0.9805 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0440    1.4201    0.5101 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1650    2.5256   -0.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4116    0.4026   -1.6518 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5164   -1.7812   -2.6454 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9988   -1.3261   -3.4985 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4556    4.9084    1.0179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946   -1.9464   -0.3227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7994   -3.3278    2.1450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3316   -3.7276    0.5152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3910   -3.1732    1.2764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7608   -2.5046    2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1712   -0.4511    2.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8689   -0.1818    0.7113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2533   -2.5703    0.8503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4295   -3.8838   -0.8488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9393   -1.4072   -0.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5490   -2.6576   -1.2452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6253   -1.2466   -2.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0107   -1.0814   -2.4978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3803    0.4315   -3.1852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5407   -0.1321   -0.5041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5439    1.7845   -0.9794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4733    2.3693   -0.1474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9796    0.9343    0.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6322    2.5235   -1.4278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9660    1.7295    0.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8232    0.4296   -3.4632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5006    0.9761   -3.7410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3800    2.0590   -2.8609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4296   -0.9113   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6195    1.4252   -1.8912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9366    1.6067   -0.1252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6311    0.6797   -0.7817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5032   -0.7709   -1.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4248    0.3421    2.4439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0846    0.8644    2.2591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9428    1.5602    1.1281 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
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 11 12  1  0
 12 13  1  0
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 13 15  2  0
  8 16  1  0
 16 17  2  0
 16 18  1  0
  2 19  1  0
 19 20  1  0
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 38 39  1  0
 38 19  1  0
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 34 80  1  0
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 35 83  1  0
 36 84  1  0
 36 85  1  0
 37 86  1  0
 37 87  1  0
 39 88  1  0
 39 89  1  0
 39 90  1  0
M  END


  Mrv1652308302121022D          

 39 42  0  0  0  0            999 V2000
   11.0730   -3.4133    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -4.6508    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.5019   -3.4133    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2164   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9309   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -3.8258    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -2.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5032   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2177   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -4.6508    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6466   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7329   -2.5929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5398   -2.4213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9523   -3.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7593   -3.3073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3113   -2.6942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0564   -1.9096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1183   -2.8658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3732   -3.6504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1802   -3.8219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.4352   -4.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2421   -4.7781    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.8831   -5.2196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0762   -5.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8212   -4.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2692   -4.8766    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0142   -4.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4622   -4.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6552   -4.5335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4003   -3.7489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7872   -4.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -2.5883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 24 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 16 35  1  0  0  0  0
 19 35  1  0  0  0  0
 35 36  1  0  0  0  0
  8 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0057249

> <DATABASE_NAME>
MIME

> <SMILES>
CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CCC12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H51N3O6/c1-17(6-9-25(36)33-23(27(37)38)5-4-14-32-28(31)39)20-7-8-21-26-22(11-13-30(20,21)3)29(2)12-10-19(34)15-18(29)16-24(26)35/h17-24,26,34-35H,4-16H2,1-3H3,(H,33,36)(H,37,38)(H3,31,32,39)

> <INCHI_KEY>
HBYDOWCFSJCMMZ-UHFFFAOYSA-N

> <FORMULA>
C30H51N3O6

> <MOLECULAR_WEIGHT>
549.753

> <EXACT_MASS>
549.377786374

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
90

> <JCHEM_AVERAGE_POLARIZABILITY>
62.891485986687776

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-(carbamoylamino)-2-(4-{5,9-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

> <ALOGPS_LOGP>
1.97

> <JCHEM_LOGP>
2.0856182423333323

> <ALOGPS_LOGS>
-5.39

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.28599044247219

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.811567399646436

> <JCHEM_PKA_STRONGEST_BASIC>
-0.43746324806666526

> <JCHEM_POLAR_SURFACE_AREA>
161.98

> <JCHEM_REFRACTIVITY>
147.40290000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.22e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-(carbamoylamino)-2-(4-{5,9-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0242404
     RDKit          3D
Chenodeoxycholylcitrulline
 90 93  0  0  0  0  0  0  0  0999 V2000
    1.5624   -2.7600    1.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7058   -1.4720    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5711   -0.4053    0.8301 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9075   -0.3502    1.5589 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8010    0.6643    0.9931 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4017    1.3176   -0.0076 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0704    0.9202    1.5312 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.9373    1.9513    0.9241 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2696    1.3537    0.5840 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1674    2.3643   -0.0538 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5245    1.7667   -0.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3642    0.6639   -1.3364 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.4917   -0.0571   -1.8153 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3230   -1.1265   -2.7124 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6386    0.2576   -1.4397 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0284    3.0374    1.9191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4608    2.9372    3.0730 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7044    4.2182    1.7098 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6035   -1.6639    0.7314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3245   -2.8855    1.2586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6662   -2.4102    1.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9204   -1.0358    1.1312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0567   -0.8361    0.2502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8711   -2.0897   -0.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1999   -2.9430   -0.9324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1642   -1.6886   -0.8070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0046   -0.7213   -1.9109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3612   -0.1832   -2.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9696    0.5849   -1.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9602    1.4241   -1.7201 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0174    1.3448   -0.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6577    1.5415   -0.8680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0748    0.4180   -1.6537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6739    0.9833   -3.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8208   -0.1516   -1.0742 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7499    0.9105   -0.9424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5206    0.0810   -0.6438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5575   -0.5110    0.7466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1335    0.6135    1.6691 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -2.6438    0.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1957   -2.8224    2.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9389   -3.6521    1.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6421   -1.3343    2.5251 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1287    0.5805    0.7204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8391   -0.7261   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3887   -1.3441    1.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6602   -0.1832    2.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4496    0.4122    2.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4758    2.3483    0.0071 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1453    0.4622   -0.0734 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7570    0.9405    1.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3928    3.2189    0.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7468    2.7886   -0.9805 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0440    1.4201    0.5101 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1650    2.5256   -0.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4116    0.4026   -1.6518 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5164   -1.7812   -2.6454 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9988   -1.3261   -3.4985 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4556    4.9084    1.0179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946   -1.9464   -0.3227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7994   -3.3278    2.1450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3316   -3.7276    0.5152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3910   -3.1732    1.2764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7608   -2.5046    2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1712   -0.4511    2.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8689   -0.1818    0.7113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2533   -2.5703    0.8503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4295   -3.8838   -0.8488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9393   -1.4072   -0.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5490   -2.6576   -1.2452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6253   -1.2466   -2.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0107   -1.0814   -2.4978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3803    0.4315   -3.1852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5407   -0.1321   -0.5041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5439    1.7845   -0.9794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4733    2.3693   -0.1474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9796    0.9343    0.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6322    2.5235   -1.4278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9660    1.7295    0.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8232    0.4296   -3.4632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5006    0.9761   -3.7410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3800    2.0590   -2.8609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4296   -0.9113   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6195    1.4252   -1.8912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9366    1.6067   -0.1252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6311    0.6797   -0.7817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5032   -0.7709   -1.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4248    0.3421    2.4439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0846    0.8644    2.2591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9428    1.5602    1.1281 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
  8 16  1  0
 16 17  2  0
 16 18  1  0
  2 19  1  0
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  1 40  1  0
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 37 87  1  0
 39 88  1  0
 39 89  1  0
 39 90  1  0
M  END

HEADER    PROTEIN                                 30-AUG-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   30-AUG-21         0                                  
HETATM    1  O   UNK     0      20.670  -6.372   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      22.003  -7.142   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      22.003  -8.682   0.000  0.00  0.00           N+0
HETATM    4  N   UNK     0      23.337  -6.372   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0      24.671  -7.142   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      26.004  -6.372   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      27.338  -7.142   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      28.672  -6.372   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      30.005  -7.142   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      31.339  -6.372   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      31.339  -4.832   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      32.673  -7.142   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      34.006  -6.372   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      35.340  -7.142   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      35.340  -8.682   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      36.674  -6.372   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      36.835  -4.840   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      38.341  -4.520   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      39.111  -5.854   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      40.617  -6.174   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      41.648  -5.029   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      41.172  -3.565   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      43.154  -5.349   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      43.630  -6.814   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      45.136  -7.134   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      45.612  -8.599   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      47.119  -8.919   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      44.582  -9.743   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      43.075  -9.423   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      42.600  -7.958   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      41.569  -9.103   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      41.093  -7.638   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      40.063  -8.783   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      38.556  -8.463   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      38.081  -6.998   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      36.936  -8.028   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      28.672  -4.832   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      30.005  -4.062   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0      27.338  -4.062   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   37                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   35                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   35                                                  
CONECT   20   19   21   32                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   30                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   24   31   32                                             
CONECT   31   30                                                            
CONECT   32   30   20   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   16   19   36                                             
CONECT   36   35                                                            
CONECT   37    8   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   84    0
END

COMPND    HMDB0242404
HETATM    1  C1  UNL     1       1.562  -2.760   1.253  1.00  0.00           C  
HETATM    2  C2  UNL     1       0.706  -1.472   1.455  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.571  -0.405   0.830  1.00  0.00           C  
HETATM    4  C4  UNL     1       2.908  -0.350   1.559  1.00  0.00           C  
HETATM    5  C5  UNL     1       3.801   0.664   0.993  1.00  0.00           C  
HETATM    6  O1  UNL     1       3.402   1.318  -0.008  1.00  0.00           O  
HETATM    7  N1  UNL     1       5.070   0.920   1.531  1.00  0.00           N  
HETATM    8  C6  UNL     1       5.937   1.951   0.924  1.00  0.00           C  
HETATM    9  C7  UNL     1       7.270   1.354   0.584  1.00  0.00           C  
HETATM   10  C8  UNL     1       8.167   2.364  -0.054  1.00  0.00           C  
HETATM   11  C9  UNL     1       9.524   1.767  -0.410  1.00  0.00           C  
HETATM   12  N2  UNL     1       9.364   0.664  -1.336  1.00  0.00           N  
HETATM   13  C10 UNL     1      10.492  -0.057  -1.815  1.00  0.00           C  
HETATM   14  N3  UNL     1      10.323  -1.126  -2.712  1.00  0.00           N  
HETATM   15  O2  UNL     1      11.639   0.258  -1.440  1.00  0.00           O  
HETATM   16  C11 UNL     1       6.028   3.037   1.919  1.00  0.00           C  
HETATM   17  O3  UNL     1       5.461   2.937   3.073  1.00  0.00           O  
HETATM   18  O4  UNL     1       6.704   4.218   1.710  1.00  0.00           O  
HETATM   19  C12 UNL     1      -0.603  -1.664   0.731  1.00  0.00           C  
HETATM   20  C13 UNL     1      -1.325  -2.886   1.259  1.00  0.00           C  
HETATM   21  C14 UNL     1      -2.666  -2.410   1.635  1.00  0.00           C  
HETATM   22  C15 UNL     1      -2.920  -1.036   1.131  1.00  0.00           C  
HETATM   23  C16 UNL     1      -4.057  -0.836   0.250  1.00  0.00           C  
HETATM   24  C17 UNL     1      -4.871  -2.090  -0.099  1.00  0.00           C  
HETATM   25  O5  UNL     1      -4.200  -2.943  -0.932  1.00  0.00           O  
HETATM   26  C18 UNL     1      -6.164  -1.689  -0.807  1.00  0.00           C  
HETATM   27  C19 UNL     1      -6.005  -0.721  -1.911  1.00  0.00           C  
HETATM   28  C20 UNL     1      -7.361  -0.183  -2.277  1.00  0.00           C  
HETATM   29  C21 UNL     1      -7.970   0.585  -1.162  1.00  0.00           C  
HETATM   30  O6  UNL     1      -8.960   1.424  -1.720  1.00  0.00           O  
HETATM   31  C22 UNL     1      -7.017   1.345  -0.310  1.00  0.00           C  
HETATM   32  C23 UNL     1      -5.658   1.542  -0.868  1.00  0.00           C  
HETATM   33  C24 UNL     1      -5.075   0.418  -1.654  1.00  0.00           C  
HETATM   34  C25 UNL     1      -4.674   0.983  -3.023  1.00  0.00           C  
HETATM   35  C26 UNL     1      -3.821  -0.152  -1.074  1.00  0.00           C  
HETATM   36  C27 UNL     1      -2.750   0.910  -0.942  1.00  0.00           C  
HETATM   37  C28 UNL     1      -1.521   0.081  -0.644  1.00  0.00           C  
HETATM   38  C29 UNL     1      -1.558  -0.511   0.747  1.00  0.00           C  
HETATM   39  C30 UNL     1      -1.134   0.614   1.669  1.00  0.00           C  
HETATM   40  H1  UNL     1       2.243  -2.644   0.388  1.00  0.00           H  
HETATM   41  H2  UNL     1       2.196  -2.822   2.157  1.00  0.00           H  
HETATM   42  H3  UNL     1       0.939  -3.652   1.205  1.00  0.00           H  
HETATM   43  H4  UNL     1       0.642  -1.334   2.525  1.00  0.00           H  
HETATM   44  H5  UNL     1       1.129   0.580   0.720  1.00  0.00           H  
HETATM   45  H6  UNL     1       1.839  -0.726  -0.220  1.00  0.00           H  
HETATM   46  H7  UNL     1       3.389  -1.344   1.462  1.00  0.00           H  
HETATM   47  H8  UNL     1       2.660  -0.183   2.622  1.00  0.00           H  
HETATM   48  H9  UNL     1       5.450   0.412   2.356  1.00  0.00           H  
HETATM   49  H10 UNL     1       5.476   2.348   0.007  1.00  0.00           H  
HETATM   50  H11 UNL     1       7.145   0.462  -0.073  1.00  0.00           H  
HETATM   51  H12 UNL     1       7.757   0.941   1.523  1.00  0.00           H  
HETATM   52  H13 UNL     1       8.393   3.219   0.619  1.00  0.00           H  
HETATM   53  H14 UNL     1       7.747   2.789  -0.981  1.00  0.00           H  
HETATM   54  H15 UNL     1      10.044   1.420   0.510  1.00  0.00           H  
HETATM   55  H16 UNL     1      10.165   2.526  -0.879  1.00  0.00           H  
HETATM   56  H17 UNL     1       8.412   0.403  -1.652  1.00  0.00           H  
HETATM   57  H18 UNL     1       9.516  -1.781  -2.645  1.00  0.00           H  
HETATM   58  H19 UNL     1      10.999  -1.326  -3.498  1.00  0.00           H  
HETATM   59  H20 UNL     1       6.456   4.908   1.018  1.00  0.00           H  
HETATM   60  H21 UNL     1      -0.295  -1.946  -0.323  1.00  0.00           H  
HETATM   61  H22 UNL     1      -0.799  -3.328   2.145  1.00  0.00           H  
HETATM   62  H23 UNL     1      -1.332  -3.728   0.515  1.00  0.00           H  
HETATM   63  H24 UNL     1      -3.391  -3.173   1.276  1.00  0.00           H  
HETATM   64  H25 UNL     1      -2.761  -2.505   2.765  1.00  0.00           H  
HETATM   65  H26 UNL     1      -3.171  -0.451   2.086  1.00  0.00           H  
HETATM   66  H27 UNL     1      -4.869  -0.182   0.711  1.00  0.00           H  
HETATM   67  H28 UNL     1      -5.253  -2.570   0.850  1.00  0.00           H  
HETATM   68  H29 UNL     1      -4.429  -3.884  -0.849  1.00  0.00           H  
HETATM   69  H30 UNL     1      -6.939  -1.407  -0.059  1.00  0.00           H  
HETATM   70  H31 UNL     1      -6.549  -2.658  -1.245  1.00  0.00           H  
HETATM   71  H32 UNL     1      -5.625  -1.247  -2.836  1.00  0.00           H  
HETATM   72  H33 UNL     1      -8.011  -1.081  -2.498  1.00  0.00           H  
HETATM   73  H34 UNL     1      -7.380   0.431  -3.185  1.00  0.00           H  
HETATM   74  H35 UNL     1      -8.541  -0.132  -0.504  1.00  0.00           H  
HETATM   75  H36 UNL     1      -9.544   1.785  -0.979  1.00  0.00           H  
HETATM   76  H37 UNL     1      -7.473   2.369  -0.147  1.00  0.00           H  
HETATM   77  H38 UNL     1      -6.980   0.934   0.743  1.00  0.00           H  
HETATM   78  H39 UNL     1      -5.632   2.524  -1.428  1.00  0.00           H  
HETATM   79  H40 UNL     1      -4.966   1.730   0.007  1.00  0.00           H  
HETATM   80  H41 UNL     1      -3.823   0.430  -3.463  1.00  0.00           H  
HETATM   81  H42 UNL     1      -5.501   0.976  -3.741  1.00  0.00           H  
HETATM   82  H43 UNL     1      -4.380   2.059  -2.861  1.00  0.00           H  
HETATM   83  H44 UNL     1      -3.430  -0.911  -1.781  1.00  0.00           H  
HETATM   84  H45 UNL     1      -2.619   1.425  -1.891  1.00  0.00           H  
HETATM   85  H46 UNL     1      -2.937   1.607  -0.125  1.00  0.00           H  
HETATM   86  H47 UNL     1      -0.631   0.680  -0.782  1.00  0.00           H  
HETATM   87  H48 UNL     1      -1.503  -0.771  -1.367  1.00  0.00           H  
HETATM   88  H49 UNL     1      -0.425   0.342   2.444  1.00  0.00           H  
HETATM   89  H50 UNL     1      -2.085   0.864   2.259  1.00  0.00           H  
HETATM   90  H51 UNL     1      -0.943   1.560   1.128  1.00  0.00           H  
CONECT    1    2   40   41   42
CONECT    2    3   19   43
CONECT    3    4   44   45
CONECT    4    5   46   47
CONECT    5    6    6    7
CONECT    7    8   48
CONECT    8    9   16   49
CONECT    9   10   50   51
CONECT   10   11   52   53
CONECT   11   12   54   55
CONECT   12   13   56
CONECT   13   14   15   15
CONECT   14   57   58
CONECT   16   17   17   18
CONECT   18   59
CONECT   19   20   38   60
CONECT   20   21   61   62
CONECT   21   22   63   64
CONECT   22   23   38   65
CONECT   23   24   35   66
CONECT   24   25   26   67
CONECT   25   68
CONECT   26   27   69   70
CONECT   27   28   33   71
CONECT   28   29   72   73
CONECT   29   30   31   74
CONECT   30   75
CONECT   31   32   76   77
CONECT   32   33   78   79
CONECT   33   34   35
CONECT   34   80   81   82
CONECT   35   36   83
CONECT   36   37   84   85
CONECT   37   38   86   87
CONECT   38   39
CONECT   39   88   89   90
END

HMDB0242404
     RDKit          3D
Chenodeoxycholylcitrulline
 90 93  0  0  0  0  0  0  0  0999 V2000
    1.5624   -2.7600    1.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7058   -1.4720    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5711   -0.4053    0.8301 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9075   -0.3502    1.5589 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8010    0.6643    0.9931 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4017    1.3176   -0.0076 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0704    0.9202    1.5312 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.9373    1.9513    0.9241 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2696    1.3537    0.5840 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1674    2.3643   -0.0538 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5245    1.7667   -0.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3642    0.6639   -1.3364 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.4917   -0.0571   -1.8153 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3230   -1.1265   -2.7124 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6386    0.2576   -1.4397 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0284    3.0374    1.9191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4608    2.9372    3.0730 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7044    4.2182    1.7098 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6035   -1.6639    0.7314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3245   -2.8855    1.2586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6662   -2.4102    1.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9204   -1.0358    1.1312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0567   -0.8361    0.2502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8711   -2.0897   -0.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1999   -2.9430   -0.9324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1642   -1.6886   -0.8070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0046   -0.7213   -1.9109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3612   -0.1832   -2.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9696    0.5849   -1.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9602    1.4241   -1.7201 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0174    1.3448   -0.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6577    1.5415   -0.8680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0748    0.4180   -1.6537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6739    0.9833   -3.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8208   -0.1516   -1.0742 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7499    0.9105   -0.9424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5206    0.0810   -0.6438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5575   -0.5110    0.7466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1335    0.6135    1.6691 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -2.6438    0.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1957   -2.8224    2.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9389   -3.6521    1.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6421   -1.3343    2.5251 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1287    0.5805    0.7204 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8391   -0.7261   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3887   -1.3441    1.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6602   -0.1832    2.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4496    0.4122    2.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4758    2.3483    0.0071 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1453    0.4622   -0.0734 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7570    0.9405    1.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3928    3.2189    0.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

Synonyms

Value	Source
2-[(4-{5,9-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0,.0,]heptadecan-14-yl}-1-hydroxypentylidene)amino]-5-[(C-hydroxycarbonimidoyl)amino]pentanoate	Generator

Molecular Formula

C₃₀H₅₁N₃O₆

Average Mass

549.753

Monoisotopic Mass

549.377786374

IUPAC Name

5-(carbamoylamino)-2-(4-{5,9-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

Traditional Name

5-(carbamoylamino)-2-(4-{5,9-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

CAS Registry Number

Not Available

SMILES

CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CCC12C

InChI Identifier

InChI=1S/C30H51N3O6/c1-17(6-9-25(36)33-23(27(37)38)5-4-14-32-28(31)39)20-7-8-21-26-22(11-13-30(20,21)3)29(2)12-10-19(34)15-18(29)16-24(26)35/h17-24,26,34-35H,4-16H2,1-3H3,(H,33,36)(H,37,38)(H3,31,32,39)

InChI Key

HBYDOWCFSJCMMZ-UHFFFAOYSA-N

Chemical Taxonomy

Functional Ontology

Not Available

Physical Properties

State

Not Available

Predicted Properties

Property	Value	Source
Water Solubility	0.0022 g/L	ALOGPS
logP	1.97	ALOGPS
logP	2.09	ChemAxon
logS	-5.4	ALOGPS
pKa (Strongest Acidic)	3.81	ChemAxon
pKa (Strongest Basic)	-0.44	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	161.98 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	147.4 m³·mol⁻¹	ChemAxon
Polarizability	62.89 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0ue9-0000190000-b94cc72109fbbe6f2e35	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-03di-2512290000-c349600d0599aaab94af	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-01ow-9233000000-5133a5b374c09cfaed23	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0002-0000090000-b331ba5126a66ebfbfdd	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-052b-3000190000-162d719de818c1fed37f	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0006-9000100000-55688d66fc95893f25aa	2021-10-12	View Spectrum

Biological Properties

Cellular Locations

Extracellular

Biospecimen Locations

Intestine

Tissue Locations

Intestine

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Not Available

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Intestine	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

HMDB0242404

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Guzior DV, Quinn RA: Review: microbial transformations of human bile acids. Microbiome. 2021 Jun 14;9(1):140. doi: 10.1186/s40168-021-01101-1. [PubMed:34127070 ]
Quinn RA, Melnik AV, Vrbanac A, Fu T, Patras KA, Christy MP, Bodai Z, Belda-Ferre P, Tripathi A, Chung LK, Downes M, Welch RD, Quinn M, Humphrey G, Panitchpakdi M, Weldon KC, Aksenov A, da Silva R, Avila-Pacheco J, Clish C, Bae S, Mallick H, Franzosa EA, Lloyd-Price J, Bussell R, Thron T, Nelson AT, Wang M, Leszczynski E, Vargas F, Gauglitz JM, Meehan MJ, Gentry E, Arthur TD, Komor AC, Poulsen O, Boland BS, Chang JT, Sandborn WJ, Lim M, Garg N, Lumeng JC, Xavier RJ, Kazmierczak BI, Jain R, Egan M, Rhee KE, Ferguson D, Raffatellu M, Vlamakis H, Haddad GG, Siegel D, Huttenhower C, Mazmanian SK, Evans RM, Nizet V, Knight R, Dorrestein PC: Global chemical effects of the microbiome include new bile-acid conjugations. Nature. 2020 Mar;579(7797):123-129. doi: 10.1038/s41586-020-2047-9. Epub 2020 Feb 26. [PubMed:32103176 ]

Showing metabocard for Chenodeoxycholylcitrulline (MMDBc0057249)

MOL for #<Metabolite:0x00007fdb18c39cb8>

3D MOL for #<Metabolite:0x00007fdb18c39cb8>

3D SDF for #<Metabolite:0x00007fdb18c39cb8>

3D-SDF for #<Metabolite:0x00007fdb18c39cb8>

PDB for #<Metabolite:0x00007fdb18c39cb8>

3D PDB for #<Metabolite:0x00007fdb18c39cb8>

SMILES for #<Metabolite:0x00007fdb18c39cb8>

INCHI for #<Metabolite:0x00007fdb18c39cb8>

Structure for #<Metabolite:0x00007fdb18c39cb8>

3D Structure for #<Metabolite:0x00007fdb18c39cb8>