MiMeDB: Clostridium scindens (MMDBm0000627)

Microbe Identification

Microbe name

Clostridium scindens

NCBI Taxonomy ID

29347

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Clostridia

Order

Clostridiales

Family

Lachnospiraceae

Genus

Lachnoclostridium

Species

Clostridium scindens

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Data Source	Reference
Human	Large intestine		BacDive	34718743
Human	Large intestine	Feces	Disbiome	12173102
Human	Large intestine	Feces	Disbiome	31219947

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Autism		Elevated	Disbiome	12173102
Human	Fibromyalgia		Elevated	Disbiome	31219947

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012907	7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oyl-CoA	12alpha-hydroxy-3-oxochola-4,6-dien-24-oyl-CoA	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0012908	7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oyl-CoA	12alpha-hydroxy-3-oxochola-4,6-dien-24-oyl-CoA	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0013322	Choloyl-CoA	Cholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0013323	Choloyl-CoA	Cholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0014349	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0014350	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0015044	Chenodeoxycholoyl-CoA	Chenodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0015045	Chenodeoxycholoyl-CoA	Chenodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0015929	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0015930	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0016280	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0016281	Adenosine triphosphate	Adenosine monophosphate	Bile acid--coenzyme A ligase	Ligation; Synthesis	RHEA	34755880
MMDBr0016328	7alpha-hydroxy-3-oxochol-4-en-24-oic acid	3-oxochola-4,6-dien-24-oic acid	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0016329	7alpha-hydroxy-3-oxochol-4-en-24-oic acid	3-oxochola-4,6-dien-24-oic acid	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0016445	Cholic acid	Choloyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016446	Cholic acid	Choloyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016447	Cholic acid	Choloyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016448	Cholic acid	Choloyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016610	Chenodeoxycholoyl-CoA	7alpha-hydroxy-3-oxochol-24-oyl-CoA	3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 1/3	Dehydrogenation	RHEA	34755880
MMDBr0016611	Choloyl-CoA	7alpha,12alpha-dihydroxy-3-oxochol-24-oyl-CoA	3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 1/3	Dehydrogenation	RHEA	34755880
MMDBr0016612	Deoxycholoyl Coenzyme A	12alpha-hydroxy-3-oxocholan-24-oyl-CoA	3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 1/3	Dehydrogenation	RHEA	34755880
MMDBr0016613	lithocholoyl-CoA	3-oxocholan-24-oyl-CoA	3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 1/3	Dehydrogenation	RHEA	34755880
MMDBr0016676	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016677	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016678	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016679	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016680	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016681	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016682	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016683	allocholic acid	allocholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016684	Chenodeoxycholic acid	Chenodeoxycholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016685	Chenodeoxycholic acid	Chenodeoxycholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016687	beta-muricholic acid	beta-muricholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016688	beta-muricholic acid	beta-muricholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016689	beta-muricholic acid	beta-muricholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016690	beta-muricholic acid	beta-muricholoyl-CoA	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016691	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016692	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016694	Deoxycholoyl Coenzyme A	Deoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016695	Deoxycholoyl Coenzyme A	Deoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016696	lithocholoyl-CoA	Lithocholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016697	lithocholoyl-CoA	Lithocholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016698	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016699	allodeoxycholoyl-CoA	allodeoxycholic acid	Bile acid CoA-transferase BaiF	Transfer of CoA moiety	RHEA	34755880
MMDBr0016837	7alpha-hydroxy-3-oxochol-24-oyl-CoA	7alpha-hydroxy-3-oxochol-4-en-24-oyl-CoA	3-oxocholoyl-CoA 4-desaturase	Desaturation	RHEA	34755880
MMDBr0016838	7alpha,12alpha-dihydroxy-3-oxochol-24-oyl-CoA	7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oyl-CoA	3-oxocholoyl-CoA 4-desaturase	Desaturation	RHEA	34755880
MMDBr0016839	7beta-hydroxy-3-oxochol-24-oyl-CoA	7beta-hydroxy-3-oxochol-4-en-24-oyl-CoA	7-beta-hydroxy-3-oxochol-24-oyl-CoA 4-desaturase	Desaturation	RHEA	34755880
MMDBr0017524	7alpha-hydroxy-3-oxochol-4-en-24-oyl-CoA	3-oxochol-4,6-dien-24-oyl-CoA	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017525	7alpha-hydroxy-3-oxochol-4-en-24-oyl-CoA	3-oxochol-4,6-dien-24-oyl-CoA	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017526	7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oic acid	12alpha-hydroxy-3-oxochola-4,6-dien-24-oic acid	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017527	7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oic acid	12alpha-hydroxy-3-oxochola-4,6-dien-24-oic acid	Bile acid 7alpha-dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0025564	NAD	Hydrogen Ion	3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 1/3	Dehydrogenation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000627

Genome Length

3362959 bp

# Predicted Proteins

3461

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 17:32:35 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_AP024846