| MMDBm0785739 | Abiotrophia defectiva | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392206 | Bacteroides oleiciplenus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392237 | Bacteroides timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0648074 | Bifidobacterium dentium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000087 | Bifidobacterium mongoliense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0648159 | Bifidobacterium ruminantium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0647984 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0805019 | Paraclostridium bifermentans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0805202 | Terrisporobacter glycolicus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805008 | Paeniclostridium sordellii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0557462 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0724384 | Eggerthella sp. 1_3_56FAA | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0000151 | Eggerthella sp. YY7918 | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0553036 | Enterobacteriaceae bacterium 9_2_54FAA | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0786739 | Enterococcus avium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786748 | Enterococcus casseliflavus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786759 | Enterococcus dispar | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787486 | Enterococcus faecium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787501 | Enterococcus gallinarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000157 | Enterococcus hirae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0540122 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001584 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000172 | Eubacterium limosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0416223 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416225 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416228 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416252 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416224 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0792733 | Lactobacillus antri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001740 | brevis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792735 | Lactobacillus coleohominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792769 | Limosilactobacillus oris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766676 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001784 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766572 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766585 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766588 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766709 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766729 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766731 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766734 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0806691 | Mogibacterium timidum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0557847 | Morganella morganii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0393374 | Odoribacter laneus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000223 | Odoribacter splanchnicus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0810440 | Parvimonas micra | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002385 | freudenreichii | Eubacteria | Actinobacteria | Facultative |
| MMDBm0558116 | Proteus mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558527 | Providencia alcalifaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558544 | Providencia rettgeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558546 | Providencia rustigianii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |