MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049735	(+)-Gama-Tocopherol	C₂₈H₄₈O₂ 416.6795	Human Feces Human Blood Human Breast Milk Human Adipose Tissue Human Epidermis Human Erythrocyte Human Fibroblasts Human Heart Human Intestine Human Leukocyte Human Liver Human Placenta Human Platelet Human Prostate Human Skeletal Muscle	11	Co-metabolite	Not Available
MMDBc0049770	Naphthalene-1,2-diol	C₁₀H₈O₂ 160.1693	Human Feces	6	Co-metabolite	Not Available
MMDBc0049786	Phylloquinol	C₃₁H₄₈O₂ 452.7116	Human Feces	17	Co-metabolite	Not Available
MMDBc0049787	10-Formyltetrahydrofolate-[Glu](5)	C₄₀H₄₅N₁₁O₁₉ 983.861	Human Feces	842	Co-metabolite	Not Available
MMDBc0049792	1,2-Ethanediol	C₂H₆O₂ 62.0678	Human Feces	96	Co-metabolite	Not Available
MMDBc0049802	9(S)-HPODE	C₁₈H₃₂O₄ 312.45	Human Feces Human Blood	1	Co-metabolite	Not Available
MMDBc0049803	13-L-Hydroperoxylinoleic acid	C₁₈H₃₂O₄ 312.4443	Human Feces Human Blood	1	Co-metabolite	Not Available
MMDBc0049810	11-Hydroperoxyoctadeca-9,12-Dienoic Acid	C₁₈H₃₁O₄ 311.443	Human Feces	6	Co-metabolite	Not Available
MMDBc0049845	Peroxynitrite	NO₃ 62.0049	Human Feces Human Cerebrospinal Fluid (CSF)	36	Co-metabolite	Not Available
MMDBc0049847	Lead	Pb 207.2	Human Feces Human Blood Human Urine Human Saliva Human Cerebrospinal Fluid (CSF)	810	Co-metabolite	Not Available
MMDBc0049848	Sulfur	S 32.065	Human Feces Human Blood Human Brain Human Cartilage Human Epidermis Human Hair Human Liver Human Platelet	508	Co-metabolite	Not Available
MMDBc0049850	Arsenobetaine	C₅H₁₁AsO₂ 178.0612	Human Feces Human Urine Human Blood	299	Co-metabolite	Not Available
MMDBc0049851	Precorrin 3B	C₄₃H₅₀N₄O₁₇ 894.884	Human Feces	318	Co-metabolite	Not Available
MMDBc0049852	Cobalt-precorrin 2	C₄₂H₄₆CoN₄O₁₆ 921.775	Human Feces	334	Co-metabolite	Not Available
MMDBc0049853	Cobalt-precorrin 6	C₄₄H₅₃CoN₄O₁₆ 952.853	Human Feces	301	Co-metabolite	Not Available
MMDBc0049854	Precorrin 6A	C₄₄H₅₄N₄O₁₆ 894.928	Human Feces	264	Co-metabolite	Not Available
MMDBc0049855	Allolithocholic Acid	C₂₄H₄₀O₃ 376.5726	Human Feces Human Gall Bladder Human Intestine Human Kidney Human Liver	5	Co-metabolite	Not Available
MMDBc0049856	5,6,7,8-Tetrahydromethanopterin	C₃₀H₄₅N₆O₁₆P 776.6827	Human Feces	36	Co-metabolite	Not Available
MMDBc0049857	5,10-Methylenetetrahydromethanopterin	C₃₁H₄₅N₆O₁₆P 788.6934	Human Feces	28	Co-metabolite	Not Available
MMDBc0049858	D-1-Aminopropan-2-ol O-phosphate	C₃H₁₀NO₄P 155.09	Human Feces	403	Co-metabolite	Not Available
MMDBc0049859	(3S,5S)-3,5-Diaminocaproate	C₆H₁₄N₂O₂ 146.1876	Human Feces	39	Co-metabolite	Not Available
MMDBc0049860	(S)-5-Amino-3-oxohexanoate	C₆H₁₁NO₃ 145.1564	Human Feces	22	Co-metabolite	Not Available
MMDBc0049861	2-Methylmaleate	C₅H₆O₄ 130.0987	Human Feces Human Urine Human Blood	27	Co-metabolite	Not Available
MMDBc0049862	Precorrin 3 A	C₄₃H₅₀N₄O₁₆ 878.885	Human Feces	44	Co-metabolite	Not Available
MMDBc0049864	Piperideine	C₅H₉N 83.134	Human Feces Human Blood	38	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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