MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0052757	9-hydroxydecanoic acid	C₁₀H₂₀O₃ 188.264	Not Available	2	Co-metabolite	Not Available
MMDBc0052832	9,10-Methylenehexadecanoyl-CoA	C₃₈H₆₆N₇O₁₇P₃S 1017.96	Not Available	0	Co-metabolite	Not Available
MMDBc0052833	9,10-Methylenetetradecanoyl-CoA	C₃₆H₆₂N₇O₁₇P₃S 989.91	Not Available	0	Co-metabolite	Not Available
MMDBc0052848	adenosylcobinamide phosphate	C₅₈H₈₇CoN₁₆O₁₄P 1322.3171	Not Available	0	Co-metabolite	Not Available
MMDBc0052849	ADP-5-ethyl-4-methylthiazole-2-carboxylate	C₁₇H₂₂N₆O₁₂P₂S 596.4	Not Available	39	Co-metabolite	Not Available
MMDBc0052868	Androstenedione	C₁₉H₂₆O₂ 286.4085	Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Adipose Tissue Human Adrenal Cortex Human Adrenal Gland Human Epidermis Human Fibroblasts Human Kidney Human Liver Human Ovary Human Placenta Human Prostate Human Skeletal Muscle Human Testis	4	Co-metabolite	Not Available
MMDBc0052879	Apiforol	C₁₅H₁₄O₅ 274.272	Not Available	1	Co-metabolite	Not Available
MMDBc0052882	Aromadendrin	C₁₅H₁₂O₆ 288.2522	Not Available	10	Co-metabolite	Not Available
MMDBc0052884	Astragalin	C₂₁H₂₀O₁₁ 448.3769	Not Available	10	Co-metabolite	Not Available
MMDBc0052885	Avenasterol	C₂₉H₄₈O 412.702	Human Blood	10	Co-metabolite	Not Available
MMDBc0052890	beta-Cryptoxanthin	C₄₀H₅₆O 552.887	Human Blood Human Breast Milk Human Feces	2	Co-metabolite	Not Available
MMDBc0052891	beta-D-Glucopyranuronic acid	C₁₃H₁₄O₉ 314.2449	Not Available	0	Co-metabolite	Not Available
MMDBc0052892	beta-L-arabinose 1-phosphate	C₅H₁₁O₈P 230.1098	Not Available	10	Co-metabolite	Not Available
MMDBc0052894	beta-Sitosterol	C₂₉H₅₀O 414.718	Human Blood Human Urine Human Fibroblasts Human Intestine Human Kidney Human Liver Human Prostate Human Testis Human Feces	19	Co-metabolite	Not Available
MMDBc0052906	Camalexin	C₁₁H₈N₂S 200.26	Not Available	12	Co-metabolite	Not Available
MMDBc0052907	Camelliol C	C₃₀H₅₀O 426.7174	Not Available	10	Co-metabolite	Not Available
MMDBc0052940	Chalconaringenin	C₁₅H₁₂O₅ 272.2528	Not Available	11	Co-metabolite	Not Available
MMDBc0052941	Chloroacetaldehyde	C₂H₃ClO 78.498	Human Kidney Human Liver	1	Co-metabolite	Not Available
MMDBc0052942	Chlorogenic acid	C₁₆H₁₈O₉ 354.3087	Human Urine Human Blood Human Bladder Human Fibroblasts	13	Co-metabolite	Not Available
MMDBc0052952	Cis-zeatin	C₁₀H₁₃N₅O 219.2431	Not Available	19	Co-metabolite	Not Available
MMDBc0052954	Cis-zeatin-7-N-glucoside	C₁₆H₂₃N₅O₆ 381.389	Not Available	10	Co-metabolite	Not Available
MMDBc0052955	Cis-zeatin-9-N-glucoside	C₁₆H₂₃N₅O₆ 381.3837	Not Available	10	Co-metabolite	Not Available
MMDBc0052969	coenzyme B12	C₇₂H₁₀₀CoN₁₈O₁₇P 1579.608	Not Available	249	Co-metabolite	Not Available
MMDBc0052970	Coniferin	C₁₆H₂₂O₈ 342.3411	Not Available	10	Co-metabolite	Not Available
MMDBc0052974	Cyanidin 3-glucoside	C₂₁H₂₁O₁₁ 449.3848	Human Urine Human Blood	10	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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