MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049902	(R)-2,3-Dihydroxy-3-methylpentanoate	C₆H₁₂O₄ 148.1571	Human Feces	1323	Co-metabolite	Not Available
MMDBc0049903	2-Methyl-1-hydroxybutyl-ThPP	C₁₇H₂₉N₄O₈P₂S 511.447	Human Feces	150	Co-metabolite	Not Available
MMDBc0049904	4-Methyl-5-(2-hydroxyethyl)-thiazole	C₆H₉NOS 143.207	Human Feces	905	Co-metabolite	Not Available
MMDBc0049906	Cobalt-precorrin 3	C₄₃H₄₈CoN₄O₁₆ 935.802	Human Feces	323	Co-metabolite	Not Available
MMDBc0049908	4-Methylcatechol	C₇H₈O₂ 124.1372	Human Feces Human Urine Human Blood	7	Co-metabolite	Not Available
MMDBc0049909	Reduced FMN	C₁₇H₂₃N₄O₉P 458.3597	Human Feces	545	Co-metabolite	Not Available
MMDBc0049910	5,6-Dimethylbenzimidazole	C₉H₁₀N₂ 146.1891	Human Feces Human Prostate Tissue Human Prostate	307	Co-metabolite	Not Available
MMDBc0049912	Cobalt-precorrin 5	C₄₅H₅₃CoN₄O₁₆ 964.864	Human Feces	321	Co-metabolite	Not Available
MMDBc0049913	Cobalt-precorrin 4	C₄₄H₅₀CoN₄O₁₆ 949.829	Human Feces	323	Co-metabolite	Not Available
MMDBc0049914	Butanoyl phosphate	C₄H₉O₅P 168.085	Human Feces	251	Co-metabolite	Not Available
MMDBc0049916	Hydrochloric acid	ClH 36.461	Human Feces	0	Co-metabolite	Not Available
MMDBc0049919	L-methionyl-L-alanine	C₈H₁₆N₂O₃S 220.29	Human Feces	864	Co-metabolite	Not Available
MMDBc0049920	Glycyl-L-methionine	C₇H₁₄N₂O₃S 206.263	Human Feces	864	Co-metabolite	Not Available
MMDBc0049921	Methyl Coenzyme M	C₃H₈O₃S₂ 156.21	Human Feces	29	Co-metabolite	Not Available
MMDBc0049922	L-Arogenate	C₁₀H₁₃NO₅ 227.216	Human Feces	828	Co-metabolite	Not Available
MMDBc0049923	Hydroxymethylglutathione	C₁₁H₁₉N₃O₇S 337.349	Human Feces	101	Co-metabolite	Not Available
MMDBc0049924	LL-2,6-Diaminoheptanedioate	C₇H₁₄N₂O₄ 190.1971	Human Feces Human Urine Human Blood	1395	Co-metabolite	Not Available
MMDBc0049925	D-Glucosamine 1-phosphate	C₆H₁₄NO₈P 259.151	Human Feces	862	Co-metabolite	Not Available
MMDBc0049926	D-Glutamate	C₅H₉NO₄ 147.1293	Human Feces Human Saliva Human Urine Human Blood Human Breast Milk Human Epidermis Human Fibroblasts Human Intestine Human Neuron Human Placenta Human Spleen Human Testis	1369	Co-metabolite	Not Available
MMDBc0049927	Acrylamide	C₃H₅NO 71.0779	Human Feces	216	Co-metabolite	Not Available
MMDBc0049928	Benzamide	C₇H₇NO 121.1366	Human Feces Human Saliva	216	Co-metabolite	Not Available
MMDBc0049929	Indole-3-acetamide	C₁₀H₁₀N₂O 174.1992	Human Feces	256	Co-metabolite	Not Available
MMDBc0049930	(-)-Ureidoglycolate	C₃H₆N₂O₄ 134.0907	Human Feces	251	Co-metabolite	Not Available
MMDBc0049931	N-Succinyl-LL-2,6-diaminoheptanedioate	C₁₁H₁₈N₂O₇ 290.2698	Human Feces	328	Co-metabolite	Not Available
MMDBc0049932	Carbamate	CH₃NO₂ 61.04	Human Feces Human Neuron Human Placenta	344	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

Host and Site

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