MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049933	4-Aminobenzoate	C₇H₇NO₂ 137.136	Human Feces Human Urine Human Blood Human Epidermis Human Fibroblasts Human Intestine Human Liver Human Placenta Human Prostate	691	Co-metabolite	Not Available
MMDBc0049934	Dihydroneopterin	C₉H₁₃N₅O₄ 255.2306	Human Feces	709	Co-metabolite	Not Available
MMDBc0049935	Dihydropteroate	C₁₄H₁₄N₆O₃ 314.2994	Human Feces	842	Co-metabolite	Not Available
MMDBc0049936	Glycyl-L-tyrosine	C₁₁H₁₄N₂O₄ 238.243	Human Feces Human Saliva	864	Co-metabolite	Not Available
MMDBc0049937	Glycyl-L-asparagine	C₆H₁₁N₃O₄ 189.1692	Human Feces	864	Co-metabolite	Not Available
MMDBc0049938	Glycyl-L-aspartate	C₆H₁₀N₂O₅ 190.154	Human Feces	864	Co-metabolite	Not Available
MMDBc0049939	Glycyl-L-glutamine	C₇H₁₃N₃O₄ 203.1958	Human Feces	864	Co-metabolite	Not Available
MMDBc0049940	Glycyl-L-glutamate	C₇H₁₂N₂O₅ 204.182	Human Feces	864	Co-metabolite	Not Available
MMDBc0049941	(3S)-3,6-Diaminohexanoate	C₆H₁₄N₂O₂ 146.1876	Human Feces	215	Co-metabolite	Not Available
MMDBc0049942	5-Aminopentanamide	C₅H₁₂N₂O 116.1616	Human Feces	21	Co-metabolite	Not Available
MMDBc0049943	1,5-Diaminopentane	C₅H₁₄N₂ 102.1781	Human Feces Human Blood Human Urine Human Saliva Human Epidermis Human Intestine Human Prostate	412	Co-metabolite	Not Available
MMDBc0049944	N-Carbamoylputrescine	C₅H₁₃N₃O 131.1762	Human Feces	361	Co-metabolite	Not Available
MMDBc0049945	D-Galacturonate	C₆H₁₀O₇ 194.1394	Human Feces	468	Co-metabolite	Not Available
MMDBc0049946	1-(5-Phosphoribosyl)-AMP	C₁₅H₂₃N₅O₁₄P₂ 559.3157	Human Feces	648	Co-metabolite	Not Available
MMDBc0049947	Shikimate	C₇H₁₀O₅ 174.1513	Human Feces Human Urine Human Blood	669	Co-metabolite	Not Available
MMDBc0049949	6-phosphonato-5-dehydro-2-deoxy-D-gluconate(3-)	C₆H₁₁O₉P 258.119	Human Feces	169	Co-metabolite	Not Available
MMDBc0049950	D-Malate	C₄H₆O₅ 134.0874	Human Feces	101	Co-metabolite	Not Available
MMDBc0049951	D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate	C₆H₁₁N₂O₆P 238.1351	Human Feces	1303	Co-metabolite	Not Available
MMDBc0049952	P1,P4-Bis(5'-uridyl) tetraphosphate	C₁₈H₂₆N₄O₂₃P₄ 790.3071	Human Feces	216	Co-metabolite	Not Available
MMDBc0049953	cis-4-Hydroxy-D-proline	C₅H₉NO₃ 131.1299	Human Feces	108	Co-metabolite	Not Available
MMDBc0049954	2-Hydroxyhepta-2-4-dienedioate	C₇H₆O₅ 170.121	Human Feces	118	Co-metabolite	Not Available
MMDBc0049956	2,3,4,5-Tetrahydrodipicolinate	C₇H₉NO₄ 171.1507	Human Feces	831	Co-metabolite	Not Available
MMDBc0049957	(2R)-O-phospho-3-sulfolactic acid	C₃H₇O₉PS 250.11	Human Feces	86	Co-metabolite	Not Available
MMDBc0049958	2,5-Dioxopentanoate	C₅H₆O₄ 130.0987	Human Feces	492	Co-metabolite	Not Available
MMDBc0049959	5-Carboxymethyl-2-hydroxymuconate	C₈H₈O₇ 216.145	Human Feces	93	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

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