MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0016117	(1S,2S)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-butyric acid	C₁₄H₂₂O₃ 238.327	Not Available	1	Co-metabolite	Not Available
MMDBc0028006	(1S,2R,4R,5S)-14-deoxy-aspergiketone	C₁₅H₂₂O₂ 234.339	Not Available	1	Co-metabolite	Not Available
MMDBc0019298	(1S,2R)-3-oxo-2-pentylcyclopentane-1-octanoic acid methyl ester	C₁₉H₃₄O₃ 310.478	Not Available	1	Co-metabolite	Not Available
MMDBc0014159	(1S,2R)-3-oxo-2-pentylcyclopentane-1-octanoic acid	C₁₈H₃₂O₃ 296.451	Not Available	1	Co-metabolite	Not Available
MMDBc0012188	(1S,2R)-3-oxo-2-pentylcyclopentane-1-hexanoic acid methyl ester	C₁₇H₃₀O₃ 282.424	Not Available	1	Co-metabolite	Not Available
MMDBc0003094	(1S,2R)-3-oxo-2-pentylcyclopentane-1-hexanoic acid	C₁₆H₂₈O₃ 268.397	Not Available	1	Co-metabolite	Not Available
MMDBc0004507	(1S,2R)-3-oxo-2-pentylcyclopentane-1-butyric acid methyl ester	C₁₅H₂₆O₃ 254.37	Not Available	1	Co-metabolite	Not Available
MMDBc0006657	(1S,2R)-3-oxo-2-pentylcyclopentane-1-butyric acid	C₁₄H₂₄O₃ 240.343	Not Available	1	Co-metabolite	Not Available
MMDBc0013029	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-octanoic acid methyl ester	C₁₉H₃₂O₃ 308.462	Not Available	1	Co-metabolite	Not Available
MMDBc0003660	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-octanoic acid	C₁₈H₃₀O₃ 294.435	Not Available	1	Co-metabolite	Not Available
MMDBc0005987	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-hexanoic acid methyl ester	C₁₇H₂₈O₃ 280.408	Not Available	1	Co-metabolite	Not Available
MMDBc0012830	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-hexanoic acid	C₁₆H₂₆O₃ 266.381	Not Available	1	Co-metabolite	Not Available
MMDBc0009922	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-butyric acid methyl ester	C₁₅H₂₄O₃ 252.354	Not Available	1	Co-metabolite	Not Available
MMDBc0009205	(1S,2R)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-butyric acid	C₁₄H₂₂O₃ 238.327	Not Available	1	Co-metabolite	Not Available
MMDBc0054026	(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol	C₇H₁₀O₂ 126.155	Not Available	2	Co-metabolite	Not Available
MMDBc0032125	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	C₁₁H₁₂NO₆P 285.193	Not Available	688	Co-metabolite	Not Available
MMDBc0029946	(1S)-Hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene	C₂₀H₂₅N₃O₇S 451.493	Human Feces	1	Co-metabolite	Not Available
MMDBc0050133	(1R,6S)-6-Amino-5-oxocyclohex-2-ene-1-carboxylate	C₇H₉NO₃ 155.153	Not Available	3	Co-metabolite	Not Available
MMDBc0054705	(1R,6S)-1,6-dihydroxycyclohexa-2,4-diene-1-carboxylic acid	C₉H₉Cl₂N 202.08	Not Available	2	Co-metabolite	Not Available
MMDBc0029943	(1R,6R)-6-Hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate	C₁₁H₁₀O₆ 238.196	Not Available	96	Co-metabolite	Not Available
MMDBc0054773	(1R,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylic acid	C₁₄H₁₂N₂O₄ 272.261	Not Available	3	Co-metabolite	Not Available
MMDBc0032888	(1R,5aS,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylic acid	C₁₄H₁₄N₂O₄ 274.276	Not Available	1	Co-metabolite	Not Available
MMDBc0054772	(1R,4S)-1-hydroxylimonen-2-one	C₁₀H₁₆O₂ 168.236	Not Available	1	Co-metabolite	Not Available
MMDBc0054023	(1R,4R,5R)-5-hydroxycamphor	C₁₀H₁₆O₂ 168.2328	Not Available	1	Co-metabolite	Not Available
MMDBc0054771	(1R,4R)-bornane-2,5-dione	C₁₀H₁₄O₂ 166.22	Not Available	1	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0016086	[Ulocladium] sp.	Fungi	Ascomycota	Not Available	Not Available	Not Available	Non-pathogenic	7
MMDBm0803020	[Ruminococcus] torques ATCC 27756	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	603
MMDBm0803018	[Ruminococcus] lactaris ATCC 29176	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	616
MMDBm0803014	[Ruminococcus] gnavus ATCC 29149	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	769
MMDBm0803009	[Ruminococcus] faecis JCM 15917	Eubacteria	Firmicutes	Not Available	Fermentative	Not Available	Non-pathogenic	0
MMDBm0053606	[Malbranchea] flavorosea	Fungi	Ascomycota	Not Available	Not Available	Not Available	Non-pathogenic	2
MMDBm0060696	[Hypocrea] muroiana	Fungi	Ascomycota	Aerobic	Not Available	Not Available	Non-pathogenic	11
MMDBm0570939	[Haemophilus] ducreyi	Eubacteria	Proteobacteria	Not Available	Not Available	Human Human Arm	Pathogenic	0
MMDBm0581026	[Flavobacterium] lutescens	Eubacteria	Proteobacteria	Not Available	Not Available	Not Available	Non-pathogenic	0
MMDBm0806096	[Eubacterium] siraeum DSM 15702	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	541
MMDBm0806716	[Eubacterium] nodatum	Eubacteria	Firmicutes	Not Available	Not Available	Human Gingiva	Pathogenic	0
MMDBm0806714	[Eubacterium] minutum	Eubacteria	Firmicutes	Not Available	Not Available	Human Tongue Human Gingiva	Pathogenic	0
MMDBm0801642	[Eubacterium] cellulosolvens 6	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	696
MMDBm0724261	[Collinsella] massiliensis	Eubacteria	Actinobacteria	Not Available	Not Available	Human Large intestine	Pathogenic	0
MMDBm0806095	[Clostridium] viride DSM 6836	Eubacteria	Firmicutes	Anaerobe	Non-saccharolytic	Human Gut	Non-pathogenic	652
MMDBm0802903	[Clostridium] symbiosum WAL-14673	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	731
MMDBm0802902	[Clostridium] symbiosum WAL-14163	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	724
MMDBm0802901	[Clostridium] symbiosum ATCC 14940	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	765
MMDBm0806093	[Clostridium] sporosphaeroides DSM 1294	Eubacteria	Firmicutes	Facultative anaerobe	Saccharolytic, respiratory or fermentative	Human Gut	Non-pathogenic	661
MMDBm0808657	[Clostridium] spiroforme DSM 1552	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	578
MMDBm0802899	[Clostridium] scindens ATCC 35704	Eubacteria	Firmicutes	Aerotolerant	Saccharolytic, fermentative	Human Gut	Non-pathogenic	714
MMDBm0808655	[Clostridium] saccharogumia DSM 17460	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	657
MMDBm0806091	[Clostridium] methylpentosum DSM 5476	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Gut	Non-pathogenic	379
MMDBm0802894	[Clostridium] methoxybenzovorans SR3	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, utilizes methoxybenzoic acid	Human Gut	Non-pathogenic	807
MMDBm0806090	[Clostridium] leptum DSM 753	Eubacteria	Firmicutes	Anaerobe	Few carbohydrates weakly fermented	Human Gut	Non-pathogenic	607

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