MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0048066	Pentaglutamyl Folate (Thf)	C₃₉H₄₅N₁₁O₁₈ 955.851	Human Feces	487	Co-metabolite	Not Available
MMDBc0048100	CE(18:1(9Z))	C₄₅H₇₈O₂ 651.0996	Human Feces Human Blood Human Adipose Tissue Human Adrenal Cortex Human Adrenal Gland Human Epidermis Human Fibroblasts Human Intestine Human Liver Human Neuron Human Platelet Human Spleen Human Testis	1	Co-metabolite	Not Available
MMDBc0048106	Nervonic acid	C₂₄H₄₅O₂ 365.623	Human Feces Human Blood Human Placenta	4	Co-metabolite	Not Available
MMDBc0048107	Erucic acid	C₂₂H₄₁O₂ 337.569	Human Feces Human Blood Human Adrenal Gland Human Placenta	10	Co-metabolite	Not Available
MMDBc0048123	Stearidonic acid	C₁₈H₂₇O₂ 275.413	Human Feces Human Blood Human Placenta	3	Co-metabolite	Not Available
MMDBc0048166	Glutaconate	C₅H₄O₄ 128.084	Human Feces	1	Co-metabolite	Not Available
MMDBc0048172	2-Aminomuconic acid	C₆H₆NO₄ 156.118	Human Feces	3	Co-metabolite	Not Available
MMDBc0048207	3-Methylthiopropionic acid	C₄H₇O₂S 119.16	Human Feces Human Urine	117	Co-metabolite	Not Available
MMDBc0048213	Acrylate	C₃H₃O₂ 71.056	Human Feces	222	Co-metabolite	Not Available
MMDBc0048215	D-Limonene	C₁₀H₁₆ 136.234	Human Feces Human Blood Human Epidermis	1	Co-metabolite	Not Available
MMDBc0048216	Perillyl aldehyde	C₁₀H₁₄O 150.221	Human Feces Human Saliva	12	Co-metabolite	Not Available
MMDBc0048217	Perillic acid	C₁₀H₁₃O₂ 165.213	Human Feces Human Blood Human Kidney Human Liver	10	Co-metabolite	Not Available
MMDBc0048236	Trans,Trans,Cis-Geranylgeranyl Diphosphate	C₂₀H₃₃O₇P₂ 447.426	Human Feces	438	Co-metabolite	Not Available
MMDBc0048238	5-Carboxy-2-oxohept-3-enedioate	C₈H₈O₇ 216.145	Human Feces	137	Co-metabolite	Not Available
MMDBc0048248	4-Oxo-1-(3-pyridyl)-1-butanone	C₉H₉NO₂ 163.176	Human Feces	1	Co-metabolite	Not Available
MMDBc0048256	2-trans,6-trans-Farnesal	C₁₅H₂₄O 220.356	Human Feces	10	Co-metabolite	Not Available
MMDBc0048258	2-Aminomuconic acid semialdehyde	C₆H₇NO₃ 141.1247	Human Feces	3	Co-metabolite	Not Available
MMDBc0048260	5-Carboxymethyl-2-hydroxymuconate semialdehyde	C₈H₈O₆ 200.146	Human Feces	74	Co-metabolite	Not Available
MMDBc0048262	Phosphonoacetaldehyde	C₂H₅O₄P 124.0325	Human Feces	269	Co-metabolite	Not Available
MMDBc0048263	Sulfoacetaldehyde	C₂H₄O₄S 124.11	Human Feces	17	Co-metabolite	Not Available
MMDBc0048267	2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	C₆H₁₁O₆PS 242.18	Human Feces	77	Co-metabolite	Not Available
MMDBc0048270	Inulin	C₂₂₈H₃₈₂O₁₉₁ 6179.373	Human Feces	128	Co-metabolite	Not Available
MMDBc0048271	1-Methylpyrrolinium	C₅H₁₀N 84.1396	Human Feces	2	Co-metabolite	Not Available
MMDBc0048272	Aflatoxin B1	C₁₇H₁₂O₆ 312.2736	Human Feces Human Blood	6	Co-metabolite	Not Available
MMDBc0048287	Dopaquinone	C₉H₉NO₄ 195.1721	Human Feces	21	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

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