MiMeDB: Methanothermobacter marburgensis str. Marburg (MMDBm0001850)

Microbe Identification

Microbe name

Methanothermobacter marburgensis str. Marburg

NCBI Taxonomy ID

79929

Microbe Taxonomy

Superkingdom

Archaea

Kingdom

Archaea

Phylum

Euryarchaeota

Class

Methanobacteria

Order

Methanobacteriales

Family

Methanobacteriaceae

Genus

Methanothermobacter

Species

marburgensis

Strain

DSM 2133, Marburg

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Obligate anaerobe

Optimal temperature

Not Available

Temperature range

Thermophilic

Habitat

Sludge

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Methanogen

Energy source

Autotroph - Lithoautotroph - Lithotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012948	(S)-malate(2-)	Hydrogen Ion	Malate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012971	beta-D-Fructose 1,6-bisphosphate	beta-D-Fructose 6-phosphate	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase	Aldol addition (or reverse); Dephosphorylation	RHEA	34755880
MMDBr0013038	diphosphate	Phosphoribosyl pyrophosphate	Tryptophan biosynthesis protein TrpCD	Transfer of a ribosyl group	RHEA	34755880
MMDBr0013127	coenzyme B	coenzyme M-coenzyme B heterodisulfide	Methyl-coenzyme M reductase subunit alpha	Reduction	RHEA	34755880
MMDBr0013128	coenzyme B	coenzyme M-coenzyme B heterodisulfide	Methyl-coenzyme M reductase subunit alpha	Reduction	RHEA	34755880
MMDBr0013347	beta-D-Fructose 1,6-bisphosphate	D-Glyceraldehyde 3-phosphate	Fructose-bisphosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013633	Adenosine triphosphate	diphosphate	Probable FAD synthase	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0013708	diphosphate	Phosphoribosyl pyrophosphate	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of phosphoribosyl group; Synthesis	RHEA	34755880
MMDBr0013833	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	Hydrogen Ion	Methenyltetrahydromethanopterin cyclohydrolase	Hydrolysis	RHEA	34755880
MMDBr0013947	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	5,10-Methylenetetrahydromethanopterin	5,10-methenyltetrahydromethanopterin hydrogenase	Hydrogenation	RHEA	34755880
MMDBr0013948	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	5,10-Methylenetetrahydromethanopterin	5,10-methenyltetrahydromethanopterin hydrogenase	Hydrogenation	RHEA	34755880
MMDBr0013949	5,10-Methylenetetrahydromethanopterin	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	5,10-methenyltetrahydromethanopterin hydrogenase	Hydrogenation	RHEA	34755880
MMDBr0014021	Hydrogen Ion	Hydrogen peroxide	Methanobactin mb-OB3b	Dismutation	RHEA	34755880
MMDBr0014033	6,7-Dimethyl-8-(1-D-ribityl)lumazine	5-amino-6-(D-ribitylamino)uracil	Riboflavin synthase	Synthesis	RHEA	34755880
MMDBr0014105	(S)-malate(2-)	Hydrogen Ion	Malate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014114	N-(5-Phospho-D-ribosyl)anthranilate	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	Phosphoribosyl isomerase A	Isomerization	RHEA	34755880
MMDBr0014327	(2E,6E,10E)-geranylgeranyl diphosphate	diphosphate	Geranylgeranylglyceryl phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014340	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	Indole-3-glycerol phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014556	diphosphate	Phosphoribosyl pyrophosphate	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0014662	2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one	2,5-diamino-6-hydroxy-4-(5-phospho-D-ribosylamino)pyrimidine	2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase	Removal of the N-terminal formyl group	RHEA	34755880
MMDBr0014816	2'-Deoxyinosine triphosphate	DIMP	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014848	Water	diphosphate	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014909	Water	diphosphate	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0015736	coenzyme B	coenzyme M-coenzyme B heterodisulfide	Fumarate reductase (CoM/CoB) subunit A	Reduction	RHEA	34755880
MMDBr0017977	5,10-Methylenetetrahydromethanopterin	5,6,7,8-Tetrahydromethanopterin	Serine hydroxymethyltransferase	Methylation	RHEA	34755880
MMDBr0016659	5-Methyl-5,6,7,8-tetrahydromethanopterin	5,6,7,8-Tetrahydromethanopterin	Tetrahydromethanopterin S-methyltransferase subunit A	Methylation	RHEA	34755880
MMDBr0017834	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	D-Glyceraldehyde 3-phosphate	Tryptophan synthase	Synthesis	RHEA	34755880
MMDBr0017879	Adenosine triphosphate	2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine	Phosphoribosylformylglycinamidine synthase	Synthesis	RHEA	34755880
MMDBr0017897	Adenosine triphosphate	diphosphate	S-adenosylmethionine synthase	Synthesis	RHEA	34755880
MMDBr0017905	Chorismate	2-Aminobenzoic acid	Aminodeoxychorismate/anthranilate synthase component 2	Synthesis	RHEA	34755880
MMDBr0024368	Adenosine triphosphate	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024391	alpha-Ketoisovaleric acid	Hydrogen Ion	Ketoisovalerate oxidoreductase subunit VorC	Redox reaction	RHEA	34755880
MMDBr0024415	(S)-4-Amino-5-oxopentanoate	Hydrogen Ion	Glutamyl-tRNA reductase	Reduction	RHEA	34755880
MMDBr0024421	Indolepyruvate	Hydrogen Ion	Indolepyruvate oxidoreductase subunit IorA	Redox reaction	RHEA	34755880
MMDBr0024429	Pyruvic acid	Hydrogen Ion	Pyruvate synthase subunit PorB	Redox reaction; Synthesis	RHEA	34755880
MMDBr0024542	Hydrogen Ion	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	F420-dependent methylenetetrahydromethanopterin dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024543	Hydrogen Ion	5,10-Methenyl-5,6,7,8-tetrahydromethanopterin	F420-dependent methylenetetrahydromethanopterin dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024558	alpha-Ketoglutarate	Hydrogen Ion	2-oxoglutarate synthase subunit KorA	Redox reaction; Synthesis	RHEA	34755880
MMDBr0024639	Water	Hydrogen Ion	Molybdenum-containing formylmethanofuran dehydrogenase 1 subunit C	Dehydrogenation	RHEA	34755880
MMDBr0024674	Hydrogen Ion	5,10-Methylenetetrahydromethanopterin	5,10-methylenetetrahydromethanopterin reductase	Reduction	RHEA	34755880
MMDBr0024686	Water	Hydrogen Ion	Nitrogenase iron protein	Nitrogen fixation	RHEA	34755880
MMDBr0024745	L-Glutamic acid	diphosphate	Glutamate--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024874	NADP(+)	Hydrogen Ion	F420-dependent NADP reductase	Reduction	RHEA	34755880
MMDBr0025326	Guanosine triphosphate	Hydrogen Ion	Probable GTP 3',8-cyclase	Cycle formation	RHEA	34755880
MMDBr0025577	Hydrogen Ion	Hydrogen	H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A	Reduction	RHEA	34755880
MMDBr0025786	L-Cysteine	Water	Peroxiredoxin	Oxidation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank