MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049861	2-Methylmaleate	C₅H₆O₄ 130.0987	Human Feces Human Urine Human Blood	27	Co-metabolite	Not Available
MMDBc0049862	Precorrin 3 A	C₄₃H₅₀N₄O₁₆ 878.885	Human Feces	44	Co-metabolite	Not Available
MMDBc0049864	Piperideine	C₅H₉N 83.134	Human Feces Human Blood	38	Co-metabolite	Not Available
MMDBc0049865	Isoprene	C₅H₈ 68.117	Human Feces	6	Co-metabolite	Not Available
MMDBc0049866	Precorrin 5	C₄₅H₅₄N₄O₁₇ 922.938	Human Feces	319	Co-metabolite	Not Available
MMDBc0049867	Precorrin 4	C₄₄H₅₂N₄O₁₇ 908.911	Human Feces	329	Co-metabolite	Not Available
MMDBc0049868	N6-Acetyl-LL-2,6-diaminoheptanedioate	C₉H₁₄N₂O₅ 230.221	Human Feces	451	Co-metabolite	Not Available
MMDBc0049869	N_Acetyl_L_2_amino_6_oxopimelate	C₉H₁₁NO₆ 229.189	Human Feces	405	Co-metabolite	Not Available
MMDBc0049870	N-Acetyl-L-citrulline	C₈H₁₅N₃O₄ 217.2224	Human Feces	746	Co-metabolite	Not Available
MMDBc0049875	O-Acetyl-L-serine	C₅H₉NO₄ 147.1293	Human Feces Human Urine Human Prostate	849	Co-metabolite	Not Available
MMDBc0049876	Acetyl phosphate	C₂H₅O₅P 140.0319	Human Feces Human Placenta	1145	Co-metabolite	Not Available
MMDBc0049878	4-Hydroxyphenylacetyl-CoA	C₂₉H₄₂N₇O₁₈P₃S 901.666	Human Feces	46	Co-metabolite	Not Available
MMDBc0049879	Glutaconoyl-CoA	C₂₆H₄₀N₇O₁₉P₃S 879.62	Human Feces	33	Co-metabolite	Not Available
MMDBc0049880	2-Hydroxyglutaryl-CoA	C₂₆H₄₂N₇O₂₀P₃S 897.63	Human Feces	33	Co-metabolite	Not Available
MMDBc0049881	4-Hydroxybutyryl-CoA	C₂₅H₄₂N₇O₁₈P₃S 853.62	Human Feces	65	Co-metabolite	Not Available
MMDBc0049883	3-Carboxy-3-hydroxy-4-methylpentanoate	C₇H₁₂O₅ 176.1672	Human Feces Human Saliva	669	Co-metabolite	Not Available
MMDBc0049884	3-Carboxy-2-hydroxy-4-methylpentanoate	C₇H₁₂O₅ 176.1672	Human Feces	668	Co-metabolite	Not Available
MMDBc0049885	3-Carboxy-4-methyl-2-oxopentanoate	C₇H₁₀O₅ 174.1513	Human Feces	725	Co-metabolite	Not Available
MMDBc0049886	Prephytoene diphosphate	C₄₀H₆₈O₇P₂ 722.9112	Human Feces	127	Co-metabolite	Not Available
MMDBc0049887	Phytoene	C₄₀H₆₄ 544.9362	Human Feces Human Blood Human Breast Milk	127	Co-metabolite	Not Available
MMDBc0049888	2-Isopropylmaleate	C₇H₁₀O₄ 158.1519	Human Feces	665	Co-metabolite	Not Available
MMDBc0049889	2-Methyl-1-hydroxypropyl-TPP	C₁₆H₂₇N₄O₈P₂S 497.42	Human Feces	150	Co-metabolite	Not Available
MMDBc0049892	3-Methyl-1-hydroxybutyl-TPP	C₁₇H₂₉N₄O₈P₂S 511.447	Human Feces	150	Co-metabolite	Not Available
MMDBc0049894	Demethylphylloquinone	C₃₀H₄₄O₂ 436.68	Human Feces	449	Co-metabolite	Not Available
MMDBc0049895	Phytyl diphosphate	C₂₀H₄₂O₇P₂ 456.4908	Human Feces	12	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

Host and Site

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